Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yggN and yggL are separated by 183 nucleotides yggL and yggH overlap by 1 nucleotides yggH and mutY are separated by 160 nucleotides
b2958: yggN - hypothetical protein (NCBI), at 3,098,926 to 3,099,645
yggN
b2959: yggL - orf, hypothetical protein (VIMSS), at 3,099,829 to 3,100,155
yggL
b2960: yggH - tRNA(m7G46)-methyltransferase (NCBI), at 3,100,155 to 3,100,874
yggH
b2961: mutY - adenine DNA glycosylase (NCBI), at 3,101,035 to 3,102,087
mutY
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-1
0
1 at 3099.052 kb on + strand, within yggN at 3099.062 kb on + strand, within yggN at 3099.190 kb on + strand, within yggN at 3099.216 kb on + strand, within yggN at 3099.216 kb on + strand, within yggN at 3099.347 kb on + strand, within yggN at 3099.350 kb on - strand, within yggN at 3099.350 kb on - strand, within yggN at 3099.366 kb on + strand, within yggN at 3099.366 kb on + strand, within yggN at 3099.482 kb on - strand, within yggN at 3099.484 kb on - strand, within yggN at 3099.533 kb on + strand, within yggN at 3099.564 kb on + strand, within yggN at 3099.564 kb on + strand, within yggN at 3099.564 kb on + strand, within yggN at 3099.569 kb on + strand, within yggN at 3099.868 kb on - strand, within yggL at 3099.907 kb on + strand, within yggL at 3099.928 kb on - strand, within yggL at 3100.069 kb on - strand, within yggL at 3100.069 kb on - strand, within yggL at 3100.096 kb on + strand, within yggL at 3100.181 kb on + strand at 3100.187 kb on - strand at 3100.187 kb on - strand at 3100.189 kb on - strand at 3100.189 kb on - strand at 3100.250 kb on + strand, within yggH at 3100.250 kb on + strand, within yggH at 3100.258 kb on - strand, within yggH at 3100.258 kb on - strand, within yggH at 3100.258 kb on - strand, within yggH at 3100.260 kb on - strand, within yggH at 3100.393 kb on - strand, within yggH at 3100.406 kb on - strand, within yggH at 3100.441 kb on + strand, within yggH at 3100.441 kb on + strand, within yggH at 3100.474 kb on + strand, within yggH at 3100.521 kb on - strand, within yggH at 3100.521 kb on - strand, within yggH at 3100.568 kb on - strand, within yggH at 3100.600 kb on + strand, within yggH at 3100.600 kb on + strand, within yggH at 3100.616 kb on - strand, within yggH at 3100.827 kb on - strand at 3100.829 kb on - strand at 3100.974 kb on + strand at 3100.974 kb on + strand at 3100.974 kb on + strand at 3101.012 kb on - strand at 3101.070 kb on - strand at 3101.070 kb on - strand at 3101.122 kb on + strand at 3101.122 kb on + strand at 3101.124 kb on + strand at 3101.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 3,099,052 + yggN b2958 0.17 -0.3 3,099,062 + yggN b2958 0.19 -0.7 3,099,190 + yggN b2958 0.37 -1.2 3,099,216 + yggN b2958 0.40 +0.6 3,099,216 + yggN b2958 0.40 +0.1 3,099,347 + yggN b2958 0.58 +0.4 3,099,350 - yggN b2958 0.59 +0.5 3,099,350 - yggN b2958 0.59 +0.2 3,099,366 + yggN b2958 0.61 +0.0 3,099,366 + yggN b2958 0.61 -0.2 3,099,482 - yggN b2958 0.77 +0.5 3,099,484 - yggN b2958 0.78 -0.7 3,099,533 + yggN b2958 0.84 -0.9 3,099,564 + yggN b2958 0.89 -1.1 3,099,564 + yggN b2958 0.89 -0.1 3,099,564 + yggN b2958 0.89 +0.3 3,099,569 + yggN b2958 0.89 +1.6 3,099,868 - yggL b2959 0.12 +1.3 3,099,907 + yggL b2959 0.24 +0.3 3,099,928 - yggL b2959 0.30 -0.1 3,100,069 - yggL b2959 0.73 +0.9 3,100,069 - yggL b2959 0.73 +0.3 3,100,096 + yggL b2959 0.82 +0.3 3,100,181 + -0.7 3,100,187 - +0.1 3,100,187 - +0.2 3,100,189 - +0.8 3,100,189 - +0.3 3,100,250 + yggH b2960 0.13 -0.1 3,100,250 + yggH b2960 0.13 +0.2 3,100,258 - yggH b2960 0.14 -0.2 3,100,258 - yggH b2960 0.14 +0.8 3,100,258 - yggH b2960 0.14 -1.1 3,100,260 - yggH b2960 0.15 +0.3 3,100,393 - yggH b2960 0.33 +0.2 3,100,406 - yggH b2960 0.35 -0.4 3,100,441 + yggH b2960 0.40 -0.9 3,100,441 + yggH b2960 0.40 -0.5 3,100,474 + yggH b2960 0.44 +0.3 3,100,521 - yggH b2960 0.51 -0.4 3,100,521 - yggH b2960 0.51 -0.8 3,100,568 - yggH b2960 0.57 -0.1 3,100,600 + yggH b2960 0.62 +0.3 3,100,600 + yggH b2960 0.62 -1.4 3,100,616 - yggH b2960 0.64 +0.0 3,100,827 - +0.5 3,100,829 - -0.1 3,100,974 + +0.4 3,100,974 + -0.1 3,100,974 + +0.1 3,101,012 - +0.2 3,101,070 - +0.0 3,101,070 - -0.3 3,101,122 + -0.7 3,101,122 + +0.3 3,101,124 + -0.2 3,101,124 + +0.3
Or see this region's nucleotide sequence