Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yggS and yggT are separated by 17 nucleotides yggT and yggU overlap by 4 nucleotides yggU and yggV are separated by 7 nucleotides yggV and yggW overlap by 8 nucleotides
b2951: yggS - predicted enzyme (NCBI), at 3,093,120 to 3,093,824
yggS
b2952: yggT - predicted inner membrane protein (NCBI), at 3,093,842 to 3,094,408
yggT
b2953: yggU - orf, hypothetical protein (VIMSS), at 3,094,405 to 3,094,695
yggU
b2954: yggV - putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI), at 3,094,703 to 3,095,296
yggV
b2955: yggW - coproporphyrinogen III oxidase (NCBI), at 3,095,289 to 3,096,425
yggW
Position (kb)
3094
3095 Strain fitness (log2 ratio)
-1
0
1 at 3093.416 kb on + strand, within yggS at 3093.416 kb on + strand, within yggS at 3093.416 kb on + strand, within yggS at 3093.604 kb on + strand, within yggS at 3093.604 kb on + strand, within yggS at 3093.675 kb on + strand, within yggS at 3093.729 kb on - strand, within yggS at 3093.855 kb on - strand at 3093.855 kb on - strand at 3093.883 kb on + strand at 3093.891 kb on - strand at 3093.930 kb on - strand, within yggT at 3093.930 kb on - strand, within yggT at 3093.940 kb on - strand, within yggT at 3094.022 kb on + strand, within yggT at 3094.067 kb on - strand, within yggT at 3094.089 kb on - strand, within yggT at 3094.089 kb on - strand, within yggT at 3094.290 kb on + strand, within yggT at 3094.319 kb on + strand, within yggT at 3094.324 kb on + strand, within yggT at 3094.333 kb on + strand, within yggT at 3094.333 kb on + strand, within yggT at 3094.391 kb on - strand at 3094.400 kb on + strand at 3094.400 kb on + strand at 3094.451 kb on + strand, within yggU at 3094.451 kb on + strand, within yggU at 3094.542 kb on + strand, within yggU at 3094.775 kb on + strand, within yggV at 3094.879 kb on + strand, within yggV at 3094.920 kb on - strand, within yggV at 3094.948 kb on + strand, within yggV at 3095.006 kb on + strand, within yggV at 3095.095 kb on - strand, within yggV at 3095.115 kb on + strand, within yggV at 3095.136 kb on + strand, within yggV at 3095.299 kb on - strand at 3095.380 kb on + strand at 3095.409 kb on - strand, within yggW at 3095.442 kb on - strand, within yggW at 3095.448 kb on + strand, within yggW at 3095.456 kb on - strand, within yggW at 3095.485 kb on + strand, within yggW at 3095.609 kb on - strand, within yggW at 3095.661 kb on - strand, within yggW
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 3,093,416 + yggS b2951 0.42 +0.3 3,093,416 + yggS b2951 0.42 +0.3 3,093,416 + yggS b2951 0.42 -0.0 3,093,604 + yggS b2951 0.69 -0.0 3,093,604 + yggS b2951 0.69 -0.4 3,093,675 + yggS b2951 0.79 -1.0 3,093,729 - yggS b2951 0.86 +0.3 3,093,855 - +0.3 3,093,855 - -0.3 3,093,883 + -0.1 3,093,891 - +1.1 3,093,930 - yggT b2952 0.16 +0.3 3,093,930 - yggT b2952 0.16 -0.8 3,093,940 - yggT b2952 0.17 -0.1 3,094,022 + yggT b2952 0.32 -1.0 3,094,067 - yggT b2952 0.40 +1.1 3,094,089 - yggT b2952 0.44 +0.4 3,094,089 - yggT b2952 0.44 +0.5 3,094,290 + yggT b2952 0.79 -0.3 3,094,319 + yggT b2952 0.84 -0.8 3,094,324 + yggT b2952 0.85 -1.2 3,094,333 + yggT b2952 0.87 +0.2 3,094,333 + yggT b2952 0.87 +0.7 3,094,391 - +0.1 3,094,400 + +0.1 3,094,400 + +0.2 3,094,451 + yggU b2953 0.16 +0.4 3,094,451 + yggU b2953 0.16 +0.6 3,094,542 + yggU b2953 0.47 +0.8 3,094,775 + yggV b2954 0.12 +0.2 3,094,879 + yggV b2954 0.30 -0.3 3,094,920 - yggV b2954 0.37 +0.3 3,094,948 + yggV b2954 0.41 -0.8 3,095,006 + yggV b2954 0.51 -0.4 3,095,095 - yggV b2954 0.66 +0.6 3,095,115 + yggV b2954 0.69 -0.6 3,095,136 + yggV b2954 0.73 +0.1 3,095,299 - +0.3 3,095,380 + +0.5 3,095,409 - yggW b2955 0.11 +0.1 3,095,442 - yggW b2955 0.13 -0.1 3,095,448 + yggW b2955 0.14 +0.5 3,095,456 - yggW b2955 0.15 +0.3 3,095,485 + yggW b2955 0.17 +1.2 3,095,609 - yggW b2955 0.28 -1.0 3,095,661 - yggW b2955 0.33 +0.2
Or see this region's nucleotide sequence