Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yffL and yffM are separated by 469 nucleotides yffM and yffN are separated by 11 nucleotides yffN and yffO are separated by 117 nucleotides yffO and yffP overlap by 4 nucleotides
b2443: yffL - CPZ-55 prophage; predicted protein (NCBI), at 2,558,279 to 2,558,920
yffL
b2444: yffM - CPZ-55 prophage; predicted protein (NCBI), at 2,559,390 to 2,559,635
yffM
b2445: yffN - CPZ-55 prophage; predicted protein (RefSeq), at 2,559,647 to 2,560,015
yffN
b2446: yffO - CPZ-55 prophage; predicted protein (NCBI), at 2,560,133 to 2,560,549
yffO
b2447: yffP - CPZ-55 prophage; predicted protein (NCBI), at 2,560,546 to 2,561,139
yffP
Position (kb)
2559
2560
2561 Strain fitness (log2 ratio)
-1
0
1 at 2558.678 kb on + strand, within yffL at 2558.734 kb on + strand, within yffL at 2558.749 kb on - strand, within yffL at 2558.754 kb on - strand, within yffL at 2558.812 kb on + strand, within yffL at 2558.941 kb on - strand at 2559.256 kb on + strand at 2559.410 kb on - strand at 2559.410 kb on - strand at 2559.536 kb on - strand, within yffM at 2559.536 kb on - strand, within yffM at 2559.699 kb on + strand, within yffN at 2559.794 kb on - strand, within yffN at 2559.794 kb on - strand, within yffN at 2559.897 kb on + strand, within yffN at 2559.897 kb on + strand, within yffN at 2559.915 kb on - strand, within yffN at 2559.941 kb on - strand, within yffN at 2560.369 kb on - strand, within yffO at 2560.487 kb on + strand, within yffO at 2560.549 kb on + strand at 2560.616 kb on - strand, within yffP at 2560.683 kb on + strand, within yffP at 2560.683 kb on + strand, within yffP at 2560.876 kb on - strand, within yffP at 2560.889 kb on - strand, within yffP
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 2,558,678 + yffL b2443 0.62 +1.0 2,558,734 + yffL b2443 0.71 +0.3 2,558,749 - yffL b2443 0.73 -1.1 2,558,754 - yffL b2443 0.74 +1.2 2,558,812 + yffL b2443 0.83 +0.4 2,558,941 - -0.3 2,559,256 + -0.1 2,559,410 - -0.1 2,559,410 - +0.7 2,559,536 - yffM b2444 0.59 +0.3 2,559,536 - yffM b2444 0.59 +0.5 2,559,699 + yffN b2445 0.14 +0.4 2,559,794 - yffN b2445 0.40 +1.1 2,559,794 - yffN b2445 0.40 -0.3 2,559,897 + yffN b2445 0.68 +0.2 2,559,897 + yffN b2445 0.68 +0.5 2,559,915 - yffN b2445 0.73 +0.8 2,559,941 - yffN b2445 0.80 +0.1 2,560,369 - yffO b2446 0.57 +0.7 2,560,487 + yffO b2446 0.85 +0.4 2,560,549 + +0.0 2,560,616 - yffP b2447 0.12 +0.1 2,560,683 + yffP b2447 0.23 +0.8 2,560,683 + yffP b2447 0.23 -0.1 2,560,876 - yffP b2447 0.56 +0.7 2,560,889 - yffP b2447 0.58 +0.7
Or see this region's nucleotide sequence