Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfeG and b2438 are separated by 45 nucleotides b2438 and eutL are separated by 12 nucleotides eutL and eutC are separated by 9 nucleotides
b2437: yfeG - predicted DNA-binding transcriptional regulator (NCBI), at 2,552,152 to 2,553,204
yfeG
b2438: b2438 - orf, hypothetical protein (VIMSS), at 2,553,250 to 2,553,750
b2438
b2439: eutL - predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI), at 2,553,763 to 2,554,422
eutL
b2440: eutC - ethanolamine ammonia-lyase small subunit (NCBI), at 2,554,432 to 2,555,319
eutC
Position (kb)
2553
2554 Strain fitness (log2 ratio)
-1
0
1 at 2552.262 kb on - strand, within yfeG at 2552.262 kb on - strand, within yfeG at 2552.460 kb on + strand, within yfeG at 2552.460 kb on + strand, within yfeG at 2552.659 kb on - strand, within yfeG at 2552.659 kb on - strand, within yfeG at 2552.719 kb on - strand, within yfeG at 2552.790 kb on - strand, within yfeG at 2552.790 kb on - strand, within yfeG at 2552.812 kb on - strand, within yfeG at 2552.812 kb on - strand, within yfeG at 2552.881 kb on + strand, within yfeG at 2552.881 kb on + strand, within yfeG at 2552.917 kb on + strand, within yfeG at 2552.917 kb on + strand, within yfeG at 2552.932 kb on + strand, within yfeG at 2552.992 kb on - strand, within yfeG at 2553.227 kb on + strand at 2553.256 kb on - strand at 2553.292 kb on + strand at 2553.469 kb on - strand, within b2438 at 2553.469 kb on - strand, within b2438 at 2553.477 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.513 kb on - strand, within b2438 at 2553.554 kb on - strand, within b2438 at 2553.598 kb on - strand, within b2438 at 2553.732 kb on + strand at 2553.922 kb on + strand, within eutL at 2554.133 kb on - strand, within eutL at 2554.133 kb on - strand, within eutL at 2554.218 kb on - strand, within eutL at 2554.225 kb on + strand, within eutL at 2554.260 kb on + strand, within eutL at 2554.325 kb on - strand, within eutL at 2554.436 kb on - strand at 2554.533 kb on - strand, within eutC at 2554.718 kb on + strand, within eutC at 2554.720 kb on + strand, within eutC at 2554.723 kb on - strand, within eutC at 2554.723 kb on - strand, within eutC
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 2,552,262 - yfeG b2437 0.10 +0.4 2,552,262 - yfeG b2437 0.10 +0.1 2,552,460 + yfeG b2437 0.29 -0.3 2,552,460 + yfeG b2437 0.29 +0.4 2,552,659 - yfeG b2437 0.48 +1.5 2,552,659 - yfeG b2437 0.48 -0.7 2,552,719 - yfeG b2437 0.54 +1.2 2,552,790 - yfeG b2437 0.61 -0.0 2,552,790 - yfeG b2437 0.61 +0.4 2,552,812 - yfeG b2437 0.63 -0.3 2,552,812 - yfeG b2437 0.63 +0.6 2,552,881 + yfeG b2437 0.69 -0.0 2,552,881 + yfeG b2437 0.69 +1.1 2,552,917 + yfeG b2437 0.73 -0.6 2,552,917 + yfeG b2437 0.73 -0.6 2,552,932 + yfeG b2437 0.74 -0.4 2,552,992 - yfeG b2437 0.80 -0.5 2,553,227 + -0.8 2,553,256 - +0.1 2,553,292 + +0.7 2,553,469 - b2438 b2438 0.44 +0.1 2,553,469 - b2438 b2438 0.44 +1.4 2,553,477 + b2438 b2438 0.45 +0.4 2,553,478 + b2438 b2438 0.46 +0.0 2,553,478 + b2438 b2438 0.46 +0.2 2,553,478 + b2438 b2438 0.46 +0.5 2,553,478 + b2438 b2438 0.46 +1.1 2,553,513 - b2438 b2438 0.52 +0.4 2,553,554 - b2438 b2438 0.61 -0.2 2,553,598 - b2438 b2438 0.69 +0.5 2,553,732 + +0.8 2,553,922 + eutL b2439 0.24 +0.3 2,554,133 - eutL b2439 0.56 +1.1 2,554,133 - eutL b2439 0.56 +0.0 2,554,218 - eutL b2439 0.69 +0.2 2,554,225 + eutL b2439 0.70 +0.8 2,554,260 + eutL b2439 0.75 +0.0 2,554,325 - eutL b2439 0.85 +0.4 2,554,436 - +0.7 2,554,533 - eutC b2440 0.11 +0.5 2,554,718 + eutC b2440 0.32 +0.7 2,554,720 + eutC b2440 0.32 -0.2 2,554,723 - eutC b2440 0.33 +0.1 2,554,723 - eutC b2440 0.33 +0.4
Or see this region's nucleotide sequence