Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt evgS and yfdE are separated by 55 nucleotides yfdE and yfdV are separated by 73 nucleotides
b2370: evgS - hybrid sensory histidine kinase in two-component regulatory system with EvgA (NCBI), at 2,482,396 to 2,485,989
evgS
b2371: yfdE - putative enzyme (VIMSS), at 2,486,045 to 2,487,190
yfdE
b2372: yfdV - predicted transporter (NCBI), at 2,487,264 to 2,488,208
yfdV
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2485.047 kb on + strand, within evgS at 2485.051 kb on + strand, within evgS at 2485.054 kb on + strand, within evgS at 2485.065 kb on + strand, within evgS at 2485.065 kb on + strand, within evgS at 2485.086 kb on + strand, within evgS at 2485.090 kb on - strand, within evgS at 2485.091 kb on + strand, within evgS at 2485.102 kb on + strand, within evgS at 2485.111 kb on - strand, within evgS at 2485.183 kb on - strand, within evgS at 2485.183 kb on - strand, within evgS at 2485.190 kb on + strand, within evgS at 2485.193 kb on - strand, within evgS at 2485.243 kb on + strand, within evgS at 2485.246 kb on - strand, within evgS at 2485.248 kb on + strand, within evgS at 2485.317 kb on - strand, within evgS at 2485.343 kb on - strand, within evgS at 2485.354 kb on - strand, within evgS at 2485.360 kb on + strand, within evgS at 2485.364 kb on - strand, within evgS at 2485.365 kb on - strand, within evgS at 2485.369 kb on + strand, within evgS at 2485.369 kb on + strand, within evgS at 2485.375 kb on - strand, within evgS at 2485.375 kb on - strand, within evgS at 2485.375 kb on - strand, within evgS at 2485.378 kb on + strand, within evgS at 2485.389 kb on - strand, within evgS at 2485.391 kb on + strand, within evgS at 2485.391 kb on + strand, within evgS at 2485.393 kb on - strand, within evgS at 2485.400 kb on + strand, within evgS at 2485.458 kb on - strand, within evgS at 2485.459 kb on + strand, within evgS at 2485.465 kb on - strand, within evgS at 2485.465 kb on - strand, within evgS at 2485.492 kb on + strand, within evgS at 2485.493 kb on + strand, within evgS at 2485.507 kb on + strand, within evgS at 2485.507 kb on + strand, within evgS at 2485.507 kb on + strand, within evgS at 2485.512 kb on + strand, within evgS at 2485.516 kb on + strand, within evgS at 2485.516 kb on - strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.518 kb on + strand, within evgS at 2485.526 kb on - strand, within evgS at 2485.526 kb on - strand, within evgS at 2485.538 kb on + strand, within evgS at 2485.538 kb on + strand, within evgS at 2485.556 kb on + strand, within evgS at 2485.564 kb on - strand, within evgS at 2485.565 kb on + strand, within evgS at 2485.580 kb on + strand, within evgS at 2485.580 kb on - strand, within evgS at 2485.584 kb on + strand, within evgS at 2485.588 kb on - strand, within evgS at 2485.588 kb on - strand, within evgS at 2485.611 kb on + strand, within evgS at 2485.611 kb on + strand, within evgS at 2485.629 kb on - strand, within evgS at 2485.629 kb on - strand, within evgS at 2485.647 kb on - strand at 2485.651 kb on - strand at 2485.688 kb on + strand at 2485.688 kb on + strand at 2485.688 kb on + strand at 2485.688 kb on + strand at 2485.688 kb on + strand at 2485.688 kb on + strand at 2485.693 kb on + strand at 2485.693 kb on + strand at 2485.700 kb on + strand at 2485.700 kb on + strand at 2485.707 kb on - strand at 2485.718 kb on + strand at 2485.725 kb on - strand at 2485.728 kb on - strand at 2485.763 kb on + strand at 2485.763 kb on - strand at 2485.765 kb on + strand at 2485.765 kb on + strand at 2485.765 kb on + strand at 2485.765 kb on + strand at 2485.765 kb on + strand at 2485.765 kb on + strand at 2485.773 kb on - strand at 2485.773 kb on - strand at 2485.797 kb on + strand at 2485.799 kb on + strand at 2485.806 kb on - strand at 2485.809 kb on + strand at 2485.809 kb on + strand at 2485.809 kb on + strand at 2485.866 kb on + strand at 2485.893 kb on + strand at 2485.893 kb on + strand at 2485.907 kb on - strand at 2485.917 kb on + strand at 2485.922 kb on + strand at 2485.925 kb on + strand at 2485.925 kb on + strand at 2485.945 kb on + strand at 2485.945 kb on + strand at 2485.945 kb on + strand at 2485.947 kb on + strand at 2485.947 kb on + strand at 2485.955 kb on + strand at 2485.988 kb on + strand at 2485.999 kb on + strand at 2486.000 kb on + strand at 2486.024 kb on + strand at 2486.024 kb on + strand at 2486.030 kb on - strand at 2486.032 kb on - strand at 2486.032 kb on - strand at 2486.045 kb on - strand at 2486.067 kb on - strand at 2486.067 kb on - strand at 2486.076 kb on - strand at 2486.081 kb on + strand at 2486.086 kb on - strand at 2486.087 kb on - strand at 2486.091 kb on - strand at 2486.092 kb on + strand at 2486.102 kb on + strand at 2486.102 kb on + strand at 2486.102 kb on + strand at 2486.110 kb on - strand at 2486.110 kb on - strand at 2486.112 kb on - strand at 2486.120 kb on - strand at 2486.124 kb on - strand at 2486.143 kb on + strand at 2486.226 kb on - strand, within yfdE at 2486.226 kb on - strand, within yfdE at 2486.262 kb on + strand, within yfdE at 2486.284 kb on - strand, within yfdE at 2486.284 kb on - strand, within yfdE at 2486.326 kb on - strand, within yfdE at 2486.378 kb on - strand, within yfdE at 2486.380 kb on - strand, within yfdE at 2486.383 kb on - strand, within yfdE at 2486.388 kb on - strand, within yfdE at 2486.388 kb on - strand, within yfdE at 2486.397 kb on - strand, within yfdE at 2486.405 kb on - strand, within yfdE at 2486.405 kb on - strand, within yfdE at 2486.405 kb on - strand, within yfdE at 2486.405 kb on - strand, within yfdE at 2486.460 kb on - strand, within yfdE at 2486.466 kb on - strand, within yfdE at 2486.466 kb on - strand, within yfdE at 2486.516 kb on - strand, within yfdE at 2486.542 kb on - strand, within yfdE at 2486.542 kb on - strand, within yfdE at 2486.547 kb on - strand, within yfdE at 2486.547 kb on - strand, within yfdE at 2486.552 kb on - strand, within yfdE at 2486.621 kb on + strand, within yfdE at 2486.674 kb on - strand, within yfdE at 2486.674 kb on - strand, within yfdE at 2486.674 kb on - strand, within yfdE at 2486.682 kb on - strand, within yfdE at 2486.689 kb on - strand, within yfdE at 2486.689 kb on - strand, within yfdE at 2486.689 kb on - strand, within yfdE at 2486.699 kb on - strand, within yfdE at 2486.701 kb on - strand, within yfdE at 2486.719 kb on - strand at 2486.728 kb on + strand, within yfdE at 2486.728 kb on + strand, within yfdE at 2486.754 kb on + strand, within yfdE at 2486.765 kb on + strand, within yfdE at 2486.765 kb on + strand, within yfdE at 2486.783 kb on - strand, within yfdE at 2486.789 kb on + strand, within yfdE at 2486.830 kb on + strand, within yfdE at 2486.830 kb on + strand, within yfdE at 2487.014 kb on - strand, within yfdE at 2487.016 kb on + strand, within yfdE at 2487.018 kb on + strand, within yfdE at 2487.021 kb on - strand, within yfdE at 2487.021 kb on - strand, within yfdE at 2487.022 kb on - strand, within yfdE at 2487.022 kb on - strand, within yfdE at 2487.026 kb on - strand, within yfdE at 2487.052 kb on - strand, within yfdE at 2487.058 kb on - strand, within yfdE at 2487.117 kb on + strand at 2487.163 kb on - strand at 2487.209 kb on - strand at 2487.209 kb on - strand at 2487.227 kb on - strand at 2487.227 kb on - strand at 2487.297 kb on - strand at 2487.302 kb on - strand at 2487.311 kb on - strand at 2487.329 kb on - strand at 2487.333 kb on + strand at 2487.341 kb on - strand at 2487.347 kb on - strand at 2487.349 kb on + strand at 2487.351 kb on - strand at 2487.352 kb on + strand at 2487.355 kb on - strand at 2487.355 kb on - strand at 2487.357 kb on - strand at 2487.357 kb on - strand at 2487.357 kb on - strand at 2487.357 kb on - strand at 2487.363 kb on - strand, within yfdV at 2487.370 kb on - strand, within yfdV at 2487.370 kb on - strand, within yfdV at 2487.401 kb on - strand, within yfdV at 2487.404 kb on + strand, within yfdV at 2487.417 kb on + strand, within yfdV at 2487.417 kb on - strand, within yfdV at 2487.417 kb on - strand, within yfdV at 2487.422 kb on - strand, within yfdV at 2487.437 kb on - strand at 2487.437 kb on - strand, within yfdV at 2487.437 kb on - strand, within yfdV at 2487.437 kb on - strand, within yfdV at 2487.452 kb on - strand, within yfdV at 2487.460 kb on + strand, within yfdV at 2487.476 kb on + strand, within yfdV at 2487.560 kb on + strand, within yfdV at 2487.570 kb on + strand, within yfdV at 2487.586 kb on + strand, within yfdV at 2487.626 kb on - strand, within yfdV at 2487.626 kb on - strand, within yfdV at 2487.626 kb on - strand, within yfdV at 2487.646 kb on + strand, within yfdV at 2487.661 kb on - strand, within yfdV at 2487.662 kb on - strand, within yfdV at 2487.663 kb on + strand, within yfdV at 2487.678 kb on + strand, within yfdV at 2487.678 kb on + strand, within yfdV at 2487.678 kb on + strand, within yfdV at 2487.678 kb on + strand, within yfdV at 2487.764 kb on + strand, within yfdV at 2487.764 kb on + strand, within yfdV
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 2,485,047 + evgS b2370 0.74 -2.7 2,485,051 + evgS b2370 0.74 -1.1 2,485,054 + evgS b2370 0.74 +3.1 2,485,065 + evgS b2370 0.74 -1.0 2,485,065 + evgS b2370 0.74 -1.8 2,485,086 + evgS b2370 0.75 +1.0 2,485,090 - evgS b2370 0.75 +0.5 2,485,091 + evgS b2370 0.75 -0.5 2,485,102 + evgS b2370 0.75 +1.3 2,485,111 - evgS b2370 0.76 +1.0 2,485,183 - evgS b2370 0.78 -2.0 2,485,183 - evgS b2370 0.78 +1.0 2,485,190 + evgS b2370 0.78 +1.0 2,485,193 - evgS b2370 0.78 -0.6 2,485,243 + evgS b2370 0.79 +0.3 2,485,246 - evgS b2370 0.79 -0.1 2,485,248 + evgS b2370 0.79 +0.6 2,485,317 - evgS b2370 0.81 -0.5 2,485,343 - evgS b2370 0.82 +0.0 2,485,354 - evgS b2370 0.82 +0.5 2,485,360 + evgS b2370 0.82 +0.5 2,485,364 - evgS b2370 0.83 -1.0 2,485,365 - evgS b2370 0.83 -0.7 2,485,369 + evgS b2370 0.83 +0.9 2,485,369 + evgS b2370 0.83 +0.5 2,485,375 - evgS b2370 0.83 +0.0 2,485,375 - evgS b2370 0.83 -1.7 2,485,375 - evgS b2370 0.83 +1.0 2,485,378 + evgS b2370 0.83 -0.4 2,485,389 - evgS b2370 0.83 -1.0 2,485,391 + evgS b2370 0.83 -0.3 2,485,391 + evgS b2370 0.83 +0.1 2,485,393 - evgS b2370 0.83 -0.5 2,485,400 + evgS b2370 0.84 -0.9 2,485,458 - evgS b2370 0.85 +0.4 2,485,459 + evgS b2370 0.85 +0.0 2,485,465 - evgS b2370 0.85 +0.8 2,485,465 - evgS b2370 0.85 +0.1 2,485,492 + evgS b2370 0.86 -1.3 2,485,493 + evgS b2370 0.86 -0.2 2,485,507 + evgS b2370 0.87 +0.3 2,485,507 + evgS b2370 0.87 -0.5 2,485,507 + evgS b2370 0.87 -0.2 2,485,512 + evgS b2370 0.87 -0.7 2,485,516 + evgS b2370 0.87 -1.0 2,485,516 - evgS b2370 0.87 -1.7 2,485,518 + evgS b2370 0.87 -0.3 2,485,518 + evgS b2370 0.87 +1.1 2,485,518 + evgS b2370 0.87 +0.3 2,485,518 + evgS b2370 0.87 +0.6 2,485,518 + evgS b2370 0.87 -0.2 2,485,518 + evgS b2370 0.87 +0.3 2,485,518 + evgS b2370 0.87 +0.2 2,485,518 + evgS b2370 0.87 +0.6 2,485,526 - evgS b2370 0.87 -1.5 2,485,526 - evgS b2370 0.87 -1.0 2,485,538 + evgS b2370 0.87 -0.3 2,485,538 + evgS b2370 0.87 +1.4 2,485,556 + evgS b2370 0.88 +0.8 2,485,564 - evgS b2370 0.88 -1.3 2,485,565 + evgS b2370 0.88 +0.1 2,485,580 + evgS b2370 0.89 -0.8 2,485,580 - evgS b2370 0.89 -0.5 2,485,584 + evgS b2370 0.89 +0.7 2,485,588 - evgS b2370 0.89 +0.0 2,485,588 - evgS b2370 0.89 +1.0 2,485,611 + evgS b2370 0.89 -0.5 2,485,611 + evgS b2370 0.89 +0.9 2,485,629 - evgS b2370 0.90 -1.5 2,485,629 - evgS b2370 0.90 +1.0 2,485,647 - +1.0 2,485,651 - -1.0 2,485,688 + -0.5 2,485,688 + +0.4 2,485,688 + -0.2 2,485,688 + +0.0 2,485,688 + -0.1 2,485,688 + -0.9 2,485,693 + +0.6 2,485,693 + +0.3 2,485,700 + -0.5 2,485,700 + +0.2 2,485,707 - +1.0 2,485,718 + +0.6 2,485,725 - +0.0 2,485,728 - +1.0 2,485,763 + -0.6 2,485,763 - -2.1 2,485,765 + +0.7 2,485,765 + -0.2 2,485,765 + -1.0 2,485,765 + -0.1 2,485,765 + -0.1 2,485,765 + +0.4 2,485,773 - +1.0 2,485,773 - +0.3 2,485,797 + +0.3 2,485,799 + +0.4 2,485,806 - -1.0 2,485,809 + -0.7 2,485,809 + +0.0 2,485,809 + +0.1 2,485,866 + +0.3 2,485,893 + -0.8 2,485,893 + +0.4 2,485,907 - -0.5 2,485,917 + +2.6 2,485,922 + +0.2 2,485,925 + -0.4 2,485,925 + -0.6 2,485,945 + +0.3 2,485,945 + -0.1 2,485,945 + +0.7 2,485,947 + +0.4 2,485,947 + +0.2 2,485,955 + +0.1 2,485,988 + -0.1 2,485,999 + -0.3 2,486,000 + -0.3 2,486,024 + -1.5 2,486,024 + -0.3 2,486,030 - +0.0 2,486,032 - -0.1 2,486,032 - -0.5 2,486,045 - -1.8 2,486,067 - +0.1 2,486,067 - -2.3 2,486,076 - -1.4 2,486,081 + +0.0 2,486,086 - -0.7 2,486,087 - +0.2 2,486,091 - -1.0 2,486,092 + +1.0 2,486,102 + +0.2 2,486,102 + +0.0 2,486,102 + +0.5 2,486,110 - +0.0 2,486,110 - -1.5 2,486,112 - +1.0 2,486,120 - +1.0 2,486,124 - +1.0 2,486,143 + +1.0 2,486,226 - yfdE b2371 0.16 +0.0 2,486,226 - yfdE b2371 0.16 +2.0 2,486,262 + yfdE b2371 0.19 +1.0 2,486,284 - yfdE b2371 0.21 -2.1 2,486,284 - yfdE b2371 0.21 -1.3 2,486,326 - yfdE b2371 0.25 -0.6 2,486,378 - yfdE b2371 0.29 -1.1 2,486,380 - yfdE b2371 0.29 -0.4 2,486,383 - yfdE b2371 0.29 -1.3 2,486,388 - yfdE b2371 0.30 -0.3 2,486,388 - yfdE b2371 0.30 -2.8 2,486,397 - yfdE b2371 0.31 -0.8 2,486,405 - yfdE b2371 0.31 +0.9 2,486,405 - yfdE b2371 0.31 +0.4 2,486,405 - yfdE b2371 0.31 -0.6 2,486,405 - yfdE b2371 0.31 -0.9 2,486,460 - yfdE b2371 0.36 -1.0 2,486,466 - yfdE b2371 0.37 +0.4 2,486,466 - yfdE b2371 0.37 +0.0 2,486,516 - yfdE b2371 0.41 +0.8 2,486,542 - yfdE b2371 0.43 -0.4 2,486,542 - yfdE b2371 0.43 -2.0 2,486,547 - yfdE b2371 0.44 +0.1 2,486,547 - yfdE b2371 0.44 -0.1 2,486,552 - yfdE b2371 0.44 -0.0 2,486,621 + yfdE b2371 0.50 +1.0 2,486,674 - yfdE b2371 0.55 -2.1 2,486,674 - yfdE b2371 0.55 -1.3 2,486,674 - yfdE b2371 0.55 -0.4 2,486,682 - yfdE b2371 0.56 -0.8 2,486,689 - yfdE b2371 0.56 -1.2 2,486,689 - yfdE b2371 0.56 +0.9 2,486,689 - yfdE b2371 0.56 -0.4 2,486,699 - yfdE b2371 0.57 -1.9 2,486,701 - yfdE b2371 0.57 -1.0 2,486,719 - +0.5 2,486,728 + yfdE b2371 0.60 +1.0 2,486,728 + yfdE b2371 0.60 +1.0 2,486,754 + yfdE b2371 0.62 +1.0 2,486,765 + yfdE b2371 0.63 +0.0 2,486,765 + yfdE b2371 0.63 +1.0 2,486,783 - yfdE b2371 0.64 +0.0 2,486,789 + yfdE b2371 0.65 +0.9 2,486,830 + yfdE b2371 0.68 -0.5 2,486,830 + yfdE b2371 0.68 -1.0 2,487,014 - yfdE b2371 0.85 +1.9 2,487,016 + yfdE b2371 0.85 +1.0 2,487,018 + yfdE b2371 0.85 +1.0 2,487,021 - yfdE b2371 0.85 +1.0 2,487,021 - yfdE b2371 0.85 +1.0 2,487,022 - yfdE b2371 0.85 +0.7 2,487,022 - yfdE b2371 0.85 +0.0 2,487,026 - yfdE b2371 0.86 +0.0 2,487,052 - yfdE b2371 0.88 +1.0 2,487,058 - yfdE b2371 0.88 +1.0 2,487,117 + -0.4 2,487,163 - +0.0 2,487,209 - +0.1 2,487,209 - +0.2 2,487,227 - +0.1 2,487,227 - -0.1 2,487,297 - -0.9 2,487,302 - -0.1 2,487,311 - -0.0 2,487,329 - -0.2 2,487,333 + +1.1 2,487,341 - +1.3 2,487,347 - +0.1 2,487,349 + -0.5 2,487,351 - +0.7 2,487,352 + +1.1 2,487,355 - -1.5 2,487,355 - +0.5 2,487,357 - +0.6 2,487,357 - +0.1 2,487,357 - -0.3 2,487,357 - +0.7 2,487,363 - yfdV b2372 0.10 -0.8 2,487,370 - yfdV b2372 0.11 -0.3 2,487,370 - yfdV b2372 0.11 -0.6 2,487,401 - yfdV b2372 0.14 +0.6 2,487,404 + yfdV b2372 0.15 +1.1 2,487,417 + yfdV b2372 0.16 -0.5 2,487,417 - yfdV b2372 0.16 +0.1 2,487,417 - yfdV b2372 0.16 -0.5 2,487,422 - yfdV b2372 0.17 -1.3 2,487,437 - -0.9 2,487,437 - yfdV b2372 0.18 +0.5 2,487,437 - yfdV b2372 0.18 +0.8 2,487,437 - yfdV b2372 0.18 -0.0 2,487,452 - yfdV b2372 0.20 +1.1 2,487,460 + yfdV b2372 0.21 -1.9 2,487,476 + yfdV b2372 0.22 +1.7 2,487,560 + yfdV b2372 0.31 -2.3 2,487,570 + yfdV b2372 0.32 -1.5 2,487,586 + yfdV b2372 0.34 +0.5 2,487,626 - yfdV b2372 0.38 +0.7 2,487,626 - yfdV b2372 0.38 -1.4 2,487,626 - yfdV b2372 0.38 +0.5 2,487,646 + yfdV b2372 0.40 +0.3 2,487,661 - yfdV b2372 0.42 +2.5 2,487,662 - yfdV b2372 0.42 -0.9 2,487,663 + yfdV b2372 0.42 +1.1 2,487,678 + yfdV b2372 0.44 -0.5 2,487,678 + yfdV b2372 0.44 +0.1 2,487,678 + yfdV b2372 0.44 +0.1 2,487,678 + yfdV b2372 0.44 +2.1 2,487,764 + yfdV b2372 0.53 +3.1 2,487,764 + yfdV b2372 0.53 -0.5
Or see this region's nucleotide sequence