Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napC and napB are separated by 9 nucleotides napB and napH overlap by 4 nucleotides napH and napG overlap by 14 nucleotides napG and napA are separated by 6 nucleotides
b2202: napC - nitrate reductase, cytochrome c-type, periplasmic (NCBI), at 2,295,679 to 2,296,281
napC
b2203: napB - cytochrome c-type protein (VIMSS), at 2,296,291 to 2,296,740
napB
b2204: napH - quinol dehydrogenase membrane component (NCBI), at 2,296,737 to 2,297,600
napH
b2205: napG - quinol dehydrogenase periplasmic component (NCBI), at 2,297,587 to 2,298,282
napG
b2206: napA - nitrate reductase, periplasmic, large subunit (NCBI), at 2,298,289 to 2,300,775
napA
Position (kb)
2296
2297
2298 Strain fitness (log2 ratio)
-1
0
1 at 2295.760 kb on + strand, within napC at 2295.760 kb on + strand, within napC at 2295.769 kb on + strand, within napC at 2295.806 kb on + strand, within napC at 2295.880 kb on + strand, within napC at 2295.921 kb on - strand, within napC at 2296.069 kb on - strand, within napC at 2296.154 kb on - strand, within napC at 2296.254 kb on + strand at 2296.254 kb on + strand at 2296.348 kb on + strand, within napB at 2296.348 kb on + strand, within napB at 2296.356 kb on + strand, within napB at 2296.356 kb on + strand, within napB at 2296.368 kb on + strand, within napB at 2296.431 kb on + strand, within napB at 2296.491 kb on + strand, within napB at 2296.491 kb on + strand, within napB at 2296.491 kb on - strand, within napB at 2296.545 kb on + strand, within napB at 2296.578 kb on + strand, within napB at 2296.578 kb on + strand, within napB at 2296.675 kb on + strand, within napB at 2296.695 kb on - strand, within napB at 2296.773 kb on + strand at 2296.773 kb on + strand at 2296.779 kb on - strand at 2296.880 kb on - strand, within napH at 2296.953 kb on + strand, within napH at 2297.095 kb on - strand, within napH at 2297.341 kb on + strand, within napH at 2297.444 kb on - strand, within napH at 2297.464 kb on + strand, within napH at 2297.476 kb on - strand, within napH at 2297.476 kb on - strand, within napH at 2297.517 kb on + strand at 2297.535 kb on - strand at 2297.535 kb on - strand at 2297.585 kb on - strand at 2297.585 kb on - strand at 2297.615 kb on - strand at 2297.676 kb on - strand, within napG at 2297.791 kb on + strand, within napG at 2297.798 kb on + strand, within napG at 2297.949 kb on + strand, within napG at 2297.953 kb on - strand, within napG at 2298.068 kb on + strand, within napG at 2298.073 kb on + strand, within napG at 2298.161 kb on - strand, within napG at 2298.190 kb on + strand, within napG at 2298.194 kb on + strand, within napG at 2298.340 kb on - strand at 2298.340 kb on - strand at 2298.469 kb on + strand at 2298.562 kb on + strand, within napA at 2298.565 kb on + strand, within napA at 2298.570 kb on - strand, within napA at 2298.572 kb on + strand, within napA at 2298.578 kb on - strand, within napA at 2298.582 kb on + strand, within napA at 2298.582 kb on + strand, within napA
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 2,295,760 + napC b2202 0.13 -0.7 2,295,760 + napC b2202 0.13 +0.1 2,295,769 + napC b2202 0.15 +0.8 2,295,806 + napC b2202 0.21 -1.1 2,295,880 + napC b2202 0.33 +0.7 2,295,921 - napC b2202 0.40 +0.2 2,296,069 - napC b2202 0.65 +0.1 2,296,154 - napC b2202 0.79 -0.0 2,296,254 + +0.7 2,296,254 + +0.9 2,296,348 + napB b2203 0.13 +0.2 2,296,348 + napB b2203 0.13 +0.5 2,296,356 + napB b2203 0.14 +0.1 2,296,356 + napB b2203 0.14 +1.0 2,296,368 + napB b2203 0.17 +0.3 2,296,431 + napB b2203 0.31 -0.1 2,296,491 + napB b2203 0.44 -0.7 2,296,491 + napB b2203 0.44 -0.5 2,296,491 - napB b2203 0.44 -1.3 2,296,545 + napB b2203 0.56 +0.3 2,296,578 + napB b2203 0.64 -1.3 2,296,578 + napB b2203 0.64 +0.2 2,296,675 + napB b2203 0.85 -0.8 2,296,695 - napB b2203 0.90 -1.5 2,296,773 + +0.8 2,296,773 + +0.0 2,296,779 - -0.1 2,296,880 - napH b2204 0.17 -0.0 2,296,953 + napH b2204 0.25 +0.4 2,297,095 - napH b2204 0.41 +0.0 2,297,341 + napH b2204 0.70 +0.6 2,297,444 - napH b2204 0.82 +0.9 2,297,464 + napH b2204 0.84 +0.3 2,297,476 - napH b2204 0.86 +0.6 2,297,476 - napH b2204 0.86 +1.2 2,297,517 + +0.4 2,297,535 - -0.2 2,297,535 - +0.0 2,297,585 - +0.8 2,297,585 - -0.6 2,297,615 - -0.1 2,297,676 - napG b2205 0.13 -0.5 2,297,791 + napG b2205 0.29 -0.9 2,297,798 + napG b2205 0.30 +0.8 2,297,949 + napG b2205 0.52 +0.1 2,297,953 - napG b2205 0.53 +0.5 2,298,068 + napG b2205 0.69 +0.3 2,298,073 + napG b2205 0.70 -0.8 2,298,161 - napG b2205 0.82 -0.0 2,298,190 + napG b2205 0.87 +0.5 2,298,194 + napG b2205 0.87 +0.4 2,298,340 - -0.2 2,298,340 - -0.1 2,298,469 + +0.1 2,298,562 + napA b2206 0.11 -0.3 2,298,565 + napA b2206 0.11 +0.3 2,298,570 - napA b2206 0.11 +0.5 2,298,572 + napA b2206 0.11 +0.7 2,298,578 - napA b2206 0.12 -0.5 2,298,582 + napA b2206 0.12 +0.8 2,298,582 + napA b2206 0.12 +0.2
Or see this region's nucleotide sequence