Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaD and yeaE are separated by 47 nucleotides yeaE and mipA are separated by 89 nucleotides mipA and yeaG are separated by 435 nucleotides
b1780: yeaD - orf, hypothetical protein (VIMSS), at 1,861,874 to 1,862,758
yeaD
b1781: yeaE - predicted oxidoreductase (NCBI), at 1,862,806 to 1,863,660
yeaE
b1782: mipA - scaffolding protein for murein synthesizing machinery (NCBI), at 1,863,750 to 1,864,496
mipA
b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 1,864,932 to 1,866,866
yeaG
Position (kb)
1863
1864
1865 Strain fitness (log2 ratio)
-2
-1
0
1 at 1862.801 kb on + strand at 1862.801 kb on + strand at 1862.851 kb on - strand at 1862.851 kb on - strand at 1862.985 kb on - strand, within yeaE at 1863.088 kb on - strand, within yeaE at 1863.147 kb on + strand, within yeaE at 1863.391 kb on - strand, within yeaE at 1863.454 kb on + strand, within yeaE at 1863.511 kb on + strand, within yeaE at 1863.597 kb on - strand at 1863.603 kb on - strand at 1863.609 kb on - strand at 1863.609 kb on - strand at 1863.821 kb on - strand at 1863.845 kb on - strand, within mipA at 1864.037 kb on + strand, within mipA at 1864.155 kb on + strand, within mipA at 1864.155 kb on + strand, within mipA at 1864.158 kb on - strand, within mipA at 1864.158 kb on - strand, within mipA at 1864.234 kb on - strand, within mipA at 1864.234 kb on - strand, within mipA at 1864.352 kb on - strand, within mipA at 1864.398 kb on + strand, within mipA at 1864.398 kb on + strand, within mipA at 1864.659 kb on + strand at 1864.659 kb on + strand at 1864.832 kb on - strand at 1865.039 kb on - strand at 1865.039 kb on - strand at 1865.044 kb on - strand at 1865.184 kb on + strand, within yeaG at 1865.184 kb on + strand, within yeaG at 1865.225 kb on - strand, within yeaG
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,862,801 + -1.5 1,862,801 + -0.6 1,862,851 - +0.7 1,862,851 - +1.6 1,862,985 - yeaE b1781 0.21 +0.2 1,863,088 - yeaE b1781 0.33 +0.1 1,863,147 + yeaE b1781 0.40 +0.2 1,863,391 - yeaE b1781 0.68 -0.1 1,863,454 + yeaE b1781 0.76 +0.2 1,863,511 + yeaE b1781 0.82 +0.5 1,863,597 - +0.1 1,863,603 - -0.4 1,863,609 - +0.5 1,863,609 - +0.8 1,863,821 - +0.6 1,863,845 - mipA b1782 0.13 +0.5 1,864,037 + mipA b1782 0.38 +0.8 1,864,155 + mipA b1782 0.54 +1.5 1,864,155 + mipA b1782 0.54 +0.8 1,864,158 - mipA b1782 0.55 +1.1 1,864,158 - mipA b1782 0.55 +1.3 1,864,234 - mipA b1782 0.65 +0.7 1,864,234 - mipA b1782 0.65 -0.4 1,864,352 - mipA b1782 0.81 -0.4 1,864,398 + mipA b1782 0.87 +0.3 1,864,398 + mipA b1782 0.87 -0.8 1,864,659 + +0.6 1,864,659 + +0.6 1,864,832 - +0.4 1,865,039 - -2.5 1,865,039 - -1.5 1,865,044 - -0.1 1,865,184 + yeaG b1783 0.13 +0.3 1,865,184 + yeaG b1783 0.13 -0.6 1,865,225 - yeaG b1783 0.15 +0.2
Or see this region's nucleotide sequence