Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1754 and ynjC overlap by 28 nucleotides ynjC and ynjD overlap by 1 nucleotides ynjD and b1757 are separated by 66 nucleotides
b1754: b1754 - orf, hypothetical protein (VIMSS), at 1,834,097 to 1,835,263
b1754
b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771
ynjC
b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424
ynjD
b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798
b1757
Position (kb)
1835
1836
1837 Strain fitness (log2 ratio)
-1
0
1
2 at 1834.332 kb on - strand, within b1754 at 1834.427 kb on + strand, within b1754 at 1834.893 kb on + strand, within b1754 at 1835.210 kb on + strand at 1835.210 kb on + strand at 1835.245 kb on - strand at 1835.495 kb on + strand, within ynjC at 1835.643 kb on - strand, within ynjC at 1835.649 kb on - strand, within ynjC at 1835.682 kb on + strand, within ynjC at 1835.896 kb on + strand, within ynjC at 1835.896 kb on + strand, within ynjC at 1835.982 kb on - strand, within ynjC at 1835.982 kb on - strand, within ynjC at 1836.212 kb on - strand, within ynjC at 1836.387 kb on + strand, within ynjC at 1836.584 kb on - strand, within ynjC at 1836.773 kb on - strand at 1836.840 kb on - strand, within ynjD at 1837.048 kb on - strand, within ynjD at 1837.083 kb on + strand, within ynjD at 1837.152 kb on + strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.248 kb on + strand, within ynjD at 1837.272 kb on - strand, within ynjD
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,834,332 - b1754 b1754 0.20 -0.5 1,834,427 + b1754 b1754 0.28 +0.2 1,834,893 + b1754 b1754 0.68 -0.2 1,835,210 + +0.5 1,835,210 + +0.3 1,835,245 - +0.3 1,835,495 + ynjC b1755 0.17 +0.4 1,835,643 - ynjC b1755 0.26 +0.4 1,835,649 - ynjC b1755 0.27 +0.4 1,835,682 + ynjC b1755 0.29 +0.4 1,835,896 + ynjC b1755 0.43 +1.9 1,835,896 + ynjC b1755 0.43 +1.9 1,835,982 - ynjC b1755 0.49 +0.2 1,835,982 - ynjC b1755 0.49 -0.0 1,836,212 - ynjC b1755 0.64 +0.6 1,836,387 + ynjC b1755 0.75 +0.2 1,836,584 - ynjC b1755 0.88 -0.2 1,836,773 - +0.4 1,836,840 - ynjD b1756 0.11 +0.2 1,837,048 - ynjD b1756 0.42 -0.1 1,837,083 + ynjD b1756 0.48 -0.2 1,837,152 + ynjD b1756 0.58 +0.1 1,837,203 - ynjD b1756 0.66 -0.5 1,837,203 - ynjD b1756 0.66 -1.4 1,837,248 + ynjD b1756 0.73 -0.4 1,837,272 - ynjD b1756 0.77 -0.1
Or see this region's nucleotide sequence