Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt astC and xthA are separated by 445 nucleotides xthA and ydjX are separated by 166 nucleotides ydjX and ydjY are separated by 4 nucleotides
b1748: astC - succinylornithine transaminase, PLP-dependent (NCBI), at 1,828,786 to 1,830,006
astC
b1749: xthA - exonuclease III (NCBI), at 1,830,452 to 1,831,258
xthA
b1750: ydjX - orf, hypothetical protein (VIMSS), at 1,831,425 to 1,832,135
ydjX
b1751: ydjY - orf, hypothetical protein (VIMSS), at 1,832,140 to 1,832,817
ydjY
Position (kb)
1830
1831
1832 Strain fitness (log2 ratio)
-2
-1
0
1 at 1829.492 kb on - strand, within astC at 1829.492 kb on - strand, within astC at 1829.911 kb on - strand at 1829.911 kb on - strand at 1829.941 kb on - strand at 1830.075 kb on + strand at 1830.078 kb on + strand at 1830.078 kb on + strand at 1830.093 kb on - strand at 1830.238 kb on - strand at 1830.238 kb on - strand at 1830.375 kb on + strand at 1830.422 kb on - strand at 1830.640 kb on - strand, within xthA at 1830.904 kb on + strand, within xthA at 1830.904 kb on + strand, within xthA at 1830.979 kb on + strand, within xthA at 1831.114 kb on + strand, within xthA at 1831.114 kb on + strand, within xthA at 1831.119 kb on + strand, within xthA at 1831.119 kb on + strand, within xthA at 1831.243 kb on - strand at 1831.243 kb on - strand at 1831.277 kb on - strand at 1831.277 kb on - strand at 1831.351 kb on + strand at 1831.351 kb on + strand at 1831.504 kb on - strand, within ydjX at 1831.535 kb on - strand, within ydjX at 1831.535 kb on - strand, within ydjX at 1831.539 kb on - strand, within ydjX at 1831.642 kb on + strand, within ydjX at 1831.658 kb on + strand, within ydjX at 1831.679 kb on - strand, within ydjX at 1831.737 kb on - strand, within ydjX at 1831.737 kb on - strand, within ydjX at 1831.766 kb on + strand, within ydjX at 1831.766 kb on + strand, within ydjX at 1831.775 kb on + strand, within ydjX at 1831.782 kb on + strand, within ydjX at 1831.827 kb on - strand, within ydjX at 1831.834 kb on + strand, within ydjX at 1831.992 kb on - strand, within ydjX at 1832.016 kb on + strand, within ydjX at 1832.016 kb on + strand, within ydjX at 1832.084 kb on - strand at 1832.113 kb on - strand at 1832.113 kb on - strand at 1832.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,829,492 - astC b1748 0.58 +0.3 1,829,492 - astC b1748 0.58 +0.5 1,829,911 - +0.8 1,829,911 - +0.0 1,829,941 - -0.1 1,830,075 + -0.1 1,830,078 + +0.4 1,830,078 + +0.5 1,830,093 - +0.5 1,830,238 - +0.0 1,830,238 - -2.6 1,830,375 + +0.1 1,830,422 - -1.8 1,830,640 - xthA b1749 0.23 -0.3 1,830,904 + xthA b1749 0.56 +0.8 1,830,904 + xthA b1749 0.56 +1.5 1,830,979 + xthA b1749 0.65 +1.0 1,831,114 + xthA b1749 0.82 +0.7 1,831,114 + xthA b1749 0.82 +0.1 1,831,119 + xthA b1749 0.83 -0.1 1,831,119 + xthA b1749 0.83 +0.4 1,831,243 - -0.5 1,831,243 - +0.3 1,831,277 - +0.2 1,831,277 - +0.7 1,831,351 + +0.2 1,831,351 + +1.0 1,831,504 - ydjX b1750 0.11 +0.1 1,831,535 - ydjX b1750 0.15 -1.0 1,831,535 - ydjX b1750 0.15 +0.6 1,831,539 - ydjX b1750 0.16 -1.4 1,831,642 + ydjX b1750 0.31 +0.3 1,831,658 + ydjX b1750 0.33 -1.1 1,831,679 - ydjX b1750 0.36 -1.0 1,831,737 - ydjX b1750 0.44 +0.4 1,831,737 - ydjX b1750 0.44 +0.3 1,831,766 + ydjX b1750 0.48 -0.5 1,831,766 + ydjX b1750 0.48 +0.7 1,831,775 + ydjX b1750 0.49 +0.8 1,831,782 + ydjX b1750 0.50 -1.8 1,831,827 - ydjX b1750 0.57 -0.4 1,831,834 + ydjX b1750 0.58 +0.5 1,831,992 - ydjX b1750 0.80 -0.3 1,832,016 + ydjX b1750 0.83 -0.3 1,832,016 + ydjX b1750 0.83 +0.7 1,832,084 - +0.4 1,832,113 - +0.6 1,832,113 - -0.2 1,832,187 + -0.3
Or see this region's nucleotide sequence