Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1648 and ydhM are separated by 102 nucleotides ydhM and nemA are separated by 36 nucleotides nemA and gloA are separated by 80 nucleotides gloA and rnt are separated by 102 nucleotides
b1648: b1648 - orf, hypothetical protein (VIMSS), at 1,723,705 to 1,723,944
b1648
b1649: ydhM - predicted DNA-binding transcriptional regulator (RefSeq), at 1,724,047 to 1,724,646
ydhM
b1650: nemA - N-ethylmaleimide reductase, FMN-linked (NCBI), at 1,724,683 to 1,725,780
nemA
b1651: gloA - glyoxalase I, Ni-dependent (NCBI), at 1,725,861 to 1,726,268
gloA
b1652: rnt - ribonuclease T (NCBI), at 1,726,371 to 1,727,018
rnt
Position (kb)
1724
1725
1726 Strain fitness (log2 ratio)
-1
0
1 at 1723.797 kb on - strand, within b1648 at 1724.028 kb on + strand at 1724.772 kb on - strand at 1725.072 kb on + strand, within nemA at 1725.075 kb on - strand, within nemA at 1725.075 kb on - strand, within nemA at 1725.118 kb on - strand, within nemA at 1725.233 kb on - strand, within nemA at 1725.233 kb on - strand, within nemA at 1725.403 kb on + strand, within nemA at 1725.437 kb on + strand, within nemA at 1725.754 kb on + strand at 1725.761 kb on - strand at 1725.763 kb on - strand at 1725.763 kb on - strand at 1725.877 kb on - strand at 1725.877 kb on - strand at 1726.040 kb on - strand, within gloA at 1726.072 kb on - strand, within gloA at 1726.092 kb on + strand, within gloA at 1726.185 kb on - strand, within gloA at 1726.185 kb on - strand, within gloA
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,723,797 - b1648 b1648 0.38 +0.5 1,724,028 + +0.2 1,724,772 - +0.3 1,725,072 + nemA b1650 0.35 -0.3 1,725,075 - nemA b1650 0.36 +0.3 1,725,075 - nemA b1650 0.36 +0.9 1,725,118 - nemA b1650 0.40 +0.6 1,725,233 - nemA b1650 0.50 +0.6 1,725,233 - nemA b1650 0.50 +0.9 1,725,403 + nemA b1650 0.66 +0.9 1,725,437 + nemA b1650 0.69 +0.5 1,725,754 + -0.3 1,725,761 - +0.6 1,725,763 - -0.3 1,725,763 - -0.1 1,725,877 - -0.2 1,725,877 - +0.7 1,726,040 - gloA b1651 0.44 -0.1 1,726,072 - gloA b1651 0.52 -0.2 1,726,092 + gloA b1651 0.57 +0.9 1,726,185 - gloA b1651 0.79 -0.2 1,726,185 - gloA b1651 0.79 +0.1
Or see this region's nucleotide sequence