Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgC and rstA are separated by 128 nucleotides rstA and rstB are separated by 3 nucleotides rstB and tus are separated by 75 nucleotides
b1607: ydgC - conserved inner membrane protein associated with alginate biosynthesis (NCBI), at 1,679,719 to 1,680,054
ydgC
b1608: rstA - DNA-binding response regulator in two-component regulatory system with RstB (RefSeq), at 1,680,183 to 1,680,902
rstA
b1609: rstB - sensory histidine kinase in two-component regulatory system with RstA (NCBI), at 1,680,906 to 1,682,207
rstB
b1610: tus - DNA replication terminus site-binding protein (NCBI), at 1,682,283 to 1,683,212
tus
Position (kb)
1680
1681
1682
1683 Strain fitness (log2 ratio)
-2
-1
0
1 at 1679.924 kb on - strand, within ydgC at 1680.147 kb on + strand at 1680.268 kb on + strand, within rstA at 1680.438 kb on + strand, within rstA at 1680.439 kb on + strand, within rstA at 1680.439 kb on + strand, within rstA at 1680.544 kb on + strand, within rstA at 1680.552 kb on - strand, within rstA at 1680.552 kb on - strand, within rstA at 1680.575 kb on + strand, within rstA at 1680.981 kb on + strand at 1680.981 kb on + strand at 1681.080 kb on + strand, within rstB at 1681.099 kb on - strand, within rstB at 1681.176 kb on + strand, within rstB at 1681.555 kb on + strand, within rstB at 1681.555 kb on + strand, within rstB at 1681.779 kb on - strand, within rstB at 1681.779 kb on - strand, within rstB at 1681.827 kb on + strand, within rstB at 1682.011 kb on + strand, within rstB at 1682.068 kb on + strand, within rstB at 1682.068 kb on + strand, within rstB at 1682.090 kb on + strand at 1682.098 kb on - strand at 1682.100 kb on - strand at 1682.102 kb on + strand at 1682.102 kb on + strand at 1682.223 kb on + strand at 1682.223 kb on + strand at 1682.306 kb on - strand at 1682.451 kb on - strand, within tus at 1682.567 kb on - strand, within tus at 1682.620 kb on + strand, within tus at 1682.620 kb on + strand, within tus at 1682.820 kb on + strand, within tus at 1682.838 kb on + strand, within tus at 1682.878 kb on + strand, within tus at 1682.886 kb on - strand, within tus at 1682.941 kb on - strand, within tus at 1682.941 kb on - strand, within tus at 1683.046 kb on + strand, within tus at 1683.046 kb on + strand, within tus at 1683.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,679,924 - ydgC b1607 0.61 +0.5 1,680,147 + +0.2 1,680,268 + rstA b1608 0.12 -0.6 1,680,438 + rstA b1608 0.35 -0.9 1,680,439 + rstA b1608 0.36 -0.7 1,680,439 + rstA b1608 0.36 +0.1 1,680,544 + rstA b1608 0.50 -0.5 1,680,552 - rstA b1608 0.51 -0.3 1,680,552 - rstA b1608 0.51 +0.6 1,680,575 + rstA b1608 0.54 +0.7 1,680,981 + +0.9 1,680,981 + +0.4 1,681,080 + rstB b1609 0.13 +0.7 1,681,099 - rstB b1609 0.15 +0.4 1,681,176 + rstB b1609 0.21 +0.0 1,681,555 + rstB b1609 0.50 +0.6 1,681,555 + rstB b1609 0.50 +0.8 1,681,779 - rstB b1609 0.67 +0.3 1,681,779 - rstB b1609 0.67 -2.5 1,681,827 + rstB b1609 0.71 +0.6 1,682,011 + rstB b1609 0.85 -0.0 1,682,068 + rstB b1609 0.89 +0.5 1,682,068 + rstB b1609 0.89 +0.7 1,682,090 + +0.1 1,682,098 - -0.2 1,682,100 - +0.7 1,682,102 + +0.4 1,682,102 + +0.4 1,682,223 + -1.6 1,682,223 + -0.5 1,682,306 - -0.5 1,682,451 - tus b1610 0.18 +0.5 1,682,567 - tus b1610 0.31 -0.7 1,682,620 + tus b1610 0.36 +0.6 1,682,620 + tus b1610 0.36 +0.7 1,682,820 + tus b1610 0.58 -0.1 1,682,838 + tus b1610 0.60 -1.3 1,682,878 + tus b1610 0.64 -0.6 1,682,886 - tus b1610 0.65 -0.4 1,682,941 - tus b1610 0.71 -1.8 1,682,941 - tus b1610 0.71 -1.0 1,683,046 + tus b1610 0.82 +0.4 1,683,046 + tus b1610 0.82 +0.5 1,683,207 + -1.0
Or see this region's nucleotide sequence