Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tynA and maoC are separated by 247 nucleotides maoC and paaA are separated by 284 nucleotides
b1386: tynA - tyramine oxidase, copper-requiring (NCBI), at 1,447,100 to 1,449,373
tynA
b1387: maoC - fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI), at 1,449,621 to 1,451,666
maoC
b1388: paaA - predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI), at 1,451,951 to 1,452,880
paaA
Position (kb)
1449
1450
1451
1452 Strain fitness (log2 ratio)
-1
0
1 at 1448.640 kb on + strand, within tynA at 1448.730 kb on - strand, within tynA at 1448.730 kb on - strand, within tynA at 1448.757 kb on - strand, within tynA at 1449.263 kb on + strand at 1449.263 kb on - strand at 1449.426 kb on - strand at 1449.443 kb on - strand at 1449.459 kb on + strand at 1449.459 kb on + strand at 1449.468 kb on + strand at 1449.545 kb on - strand at 1449.564 kb on + strand at 1449.685 kb on + strand at 1449.844 kb on - strand, within maoC at 1450.266 kb on - strand, within maoC at 1450.268 kb on + strand, within maoC at 1450.276 kb on - strand, within maoC at 1450.292 kb on + strand, within maoC at 1450.484 kb on + strand, within maoC at 1450.534 kb on - strand, within maoC at 1451.006 kb on - strand, within maoC at 1451.232 kb on + strand, within maoC at 1451.232 kb on + strand, within maoC at 1451.305 kb on + strand, within maoC at 1451.595 kb on + strand at 1451.984 kb on + strand at 1451.984 kb on + strand at 1452.190 kb on - strand, within paaA at 1452.425 kb on - strand, within paaA at 1452.529 kb on - strand, within paaA at 1452.529 kb on - strand, within paaA at 1452.655 kb on + strand, within paaA
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,448,640 + tynA b1386 0.68 -0.5 1,448,730 - tynA b1386 0.72 -0.1 1,448,730 - tynA b1386 0.72 -1.2 1,448,757 - tynA b1386 0.73 +0.2 1,449,263 + +0.1 1,449,263 - +0.3 1,449,426 - +0.4 1,449,443 - +0.1 1,449,459 + +0.6 1,449,459 + +0.5 1,449,468 + +0.1 1,449,545 - -0.1 1,449,564 + +0.6 1,449,685 + -0.6 1,449,844 - maoC b1387 0.11 +0.3 1,450,266 - maoC b1387 0.32 +1.0 1,450,268 + maoC b1387 0.32 -0.5 1,450,276 - maoC b1387 0.32 +0.6 1,450,292 + maoC b1387 0.33 +0.2 1,450,484 + maoC b1387 0.42 +0.5 1,450,534 - maoC b1387 0.45 +0.4 1,451,006 - maoC b1387 0.68 +1.3 1,451,232 + maoC b1387 0.79 +1.2 1,451,232 + maoC b1387 0.79 -0.0 1,451,305 + maoC b1387 0.82 -0.7 1,451,595 + -1.5 1,451,984 + +0.3 1,451,984 + +1.0 1,452,190 - paaA b1388 0.26 -0.5 1,452,425 - paaA b1388 0.51 +0.4 1,452,529 - paaA b1388 0.62 -0.1 1,452,529 - paaA b1388 0.62 -0.0 1,452,655 + paaA b1388 0.76 +0.6
Or see this region's nucleotide sequence