Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjQ and b1314 are separated by 18 nucleotides b1314 and ycjS are separated by 9 nucleotides ycjS and ycjT overlap by 4 nucleotides
b1313: ycjQ - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 1,372,987 to 1,374,039
ycjQ
b1314: b1314 - putative transient receptor potential locus (VIMSS), at 1,374,058 to 1,374,846
b1314
b1315: ycjS - predicted oxidoreductase, NADH-binding (NCBI), at 1,374,856 to 1,375,911
ycjS
b1316: ycjT - predicted hydrolase (NCBI), at 1,375,908 to 1,378,175
ycjT
Position (kb)
1374
1375
1376 Strain fitness (log2 ratio)
-1
0
1 at 1373.883 kb on + strand, within ycjQ at 1374.246 kb on - strand, within b1314 at 1374.292 kb on + strand, within b1314 at 1374.325 kb on + strand, within b1314 at 1374.416 kb on - strand, within b1314 at 1374.662 kb on + strand, within b1314 at 1374.708 kb on - strand, within b1314 at 1374.759 kb on + strand, within b1314 at 1374.769 kb on - strand at 1374.769 kb on - strand at 1374.907 kb on + strand at 1375.200 kb on + strand, within ycjS at 1375.420 kb on + strand, within ycjS at 1375.426 kb on - strand, within ycjS at 1375.566 kb on + strand, within ycjS at 1375.566 kb on + strand, within ycjS at 1375.566 kb on + strand, within ycjS at 1375.701 kb on + strand, within ycjS at 1375.709 kb on - strand, within ycjS at 1375.709 kb on - strand, within ycjS at 1375.842 kb on - strand at 1375.872 kb on + strand at 1375.872 kb on + strand at 1375.985 kb on + strand at 1375.985 kb on + strand at 1376.172 kb on + strand, within ycjT at 1376.392 kb on - strand, within ycjT at 1376.562 kb on - strand, within ycjT at 1376.589 kb on - strand, within ycjT at 1376.589 kb on - strand, within ycjT
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,373,883 + ycjQ b1313 0.85 +1.2 1,374,246 - b1314 b1314 0.24 -0.3 1,374,292 + b1314 b1314 0.30 +0.2 1,374,325 + b1314 b1314 0.34 +0.4 1,374,416 - b1314 b1314 0.45 +0.1 1,374,662 + b1314 b1314 0.77 +1.1 1,374,708 - b1314 b1314 0.82 +0.4 1,374,759 + b1314 b1314 0.89 +0.6 1,374,769 - +0.4 1,374,769 - +0.3 1,374,907 + -0.7 1,375,200 + ycjS b1315 0.33 +0.2 1,375,420 + ycjS b1315 0.53 +0.5 1,375,426 - ycjS b1315 0.54 +0.3 1,375,566 + ycjS b1315 0.67 -0.1 1,375,566 + ycjS b1315 0.67 +0.5 1,375,566 + ycjS b1315 0.67 +0.5 1,375,701 + ycjS b1315 0.80 +1.0 1,375,709 - ycjS b1315 0.81 +0.3 1,375,709 - ycjS b1315 0.81 -0.2 1,375,842 - +0.8 1,375,872 + -0.4 1,375,872 + +0.2 1,375,985 + +0.9 1,375,985 + +0.5 1,376,172 + ycjT b1316 0.12 +0.3 1,376,392 - ycjT b1316 0.21 +0.2 1,376,562 - ycjT b1316 0.29 +0.3 1,376,589 - ycjT b1316 0.30 +0.3 1,376,589 - ycjT b1316 0.30 -0.0
Or see this region's nucleotide sequence