Experiment: 18 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1012 and ycdC are separated by 230 nucleotides ycdC and putA are separated by 39 nucleotides
b1012: b1012 - orf, hypothetical protein (VIMSS), at 1,072,086 to 1,073,234
b1012
b1013: ycdC - predicted DNA-binding transcriptional regulator (NCBI), at 1,073,465 to 1,074,103
ycdC
b1014: putA - fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI), at 1,074,143 to 1,078,105
putA
Position (kb)
1073
1074
1075 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1072.477 kb on - strand, within b1012 at 1072.477 kb on - strand, within b1012 at 1072.730 kb on - strand, within b1012 at 1072.755 kb on - strand, within b1012 at 1073.238 kb on + strand at 1073.585 kb on - strand, within ycdC at 1073.585 kb on - strand, within ycdC at 1073.819 kb on - strand, within ycdC at 1073.908 kb on + strand, within ycdC at 1074.009 kb on - strand, within ycdC at 1074.073 kb on + strand at 1074.086 kb on - strand at 1074.088 kb on + strand at 1074.088 kb on + strand at 1074.126 kb on - strand at 1074.140 kb on + strand at 1074.195 kb on - strand at 1074.215 kb on - strand at 1074.218 kb on - strand at 1074.218 kb on - strand at 1074.294 kb on + strand at 1074.306 kb on + strand at 1074.438 kb on + strand at 1074.438 kb on + strand at 1074.499 kb on + strand at 1074.529 kb on - strand at 1074.529 kb on - strand at 1074.602 kb on - strand, within putA at 1074.714 kb on + strand, within putA at 1074.790 kb on + strand, within putA at 1074.794 kb on + strand, within putA at 1074.794 kb on + strand, within putA at 1074.847 kb on + strand, within putA at 1074.885 kb on + strand, within putA at 1074.885 kb on + strand, within putA at 1074.904 kb on + strand, within putA at 1074.904 kb on + strand, within putA at 1075.016 kb on + strand, within putA at 1075.031 kb on + strand, within putA
Per-strain Table
Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl remove 1,072,477 - b1012 b1012 0.34 -0.7 1,072,477 - b1012 b1012 0.34 -0.4 1,072,730 - b1012 b1012 0.56 +0.2 1,072,755 - b1012 b1012 0.58 +0.5 1,073,238 + +0.3 1,073,585 - ycdC b1013 0.19 -0.8 1,073,585 - ycdC b1013 0.19 +1.7 1,073,819 - ycdC b1013 0.55 +0.9 1,073,908 + ycdC b1013 0.69 -0.3 1,074,009 - ycdC b1013 0.85 +0.7 1,074,073 + +0.4 1,074,086 - +0.9 1,074,088 + -0.7 1,074,088 + -0.8 1,074,126 - +0.6 1,074,140 + +0.1 1,074,195 - +0.3 1,074,215 - -0.6 1,074,218 - -0.0 1,074,218 - +0.6 1,074,294 + +0.7 1,074,306 + -1.2 1,074,438 + +0.1 1,074,438 + -0.4 1,074,499 + +0.7 1,074,529 - -0.9 1,074,529 - +1.0 1,074,602 - putA b1014 0.12 +0.5 1,074,714 + putA b1014 0.14 +0.0 1,074,790 + putA b1014 0.16 -0.3 1,074,794 + putA b1014 0.16 -0.1 1,074,794 + putA b1014 0.16 -3.3 1,074,847 + putA b1014 0.18 -0.5 1,074,885 + putA b1014 0.19 +0.8 1,074,885 + putA b1014 0.19 -0.3 1,074,904 + putA b1014 0.19 -0.8 1,074,904 + putA b1014 0.19 +0.2 1,075,016 + putA b1014 0.22 -1.5 1,075,031 + putA b1014 0.22 +0.5
Or see this region's nucleotide sequence