Strain Fitness in Escherichia coli BW25113 around b0916

Experiment: 18 hr NoPredatorControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxK and ycaQ are separated by 36 nucleotidesycaQ and ycaR are separated by 51 nucleotidesycaR and kdsB overlap by 4 nucleotides b0915: lpxK - tetraacyldisaccharide 4'-kinase (NCBI), at 967,589 to 968,575 lpxK b0916: ycaQ - hypothetical protein (NCBI), at 968,612 to 969,844 ycaQ b0917: ycaR - hypothetical protein (NCBI), at 969,896 to 970,078 ycaR b0918: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase (NCBI), at 970,075 to 970,821 kdsB Position (kb) 968 969 970Strain fitness (log2 ratio) -1 0 1at 968.649 kb on + strandat 968.674 kb on + strandat 968.737 kb on - strand, within ycaQat 968.737 kb on - strand, within ycaQat 968.775 kb on + strand, within ycaQat 968.775 kb on + strand, within ycaQat 968.811 kb on + strand, within ycaQat 968.811 kb on + strandat 968.863 kb on - strand, within ycaQat 968.865 kb on - strand, within ycaQat 968.880 kb on + strand, within ycaQat 968.880 kb on + strand, within ycaQat 969.033 kb on - strand, within ycaQat 969.050 kb on + strand, within ycaQat 969.060 kb on - strand, within ycaQat 969.275 kb on - strand, within ycaQat 969.282 kb on + strand, within ycaQat 969.300 kb on - strand, within ycaQat 969.300 kb on - strand, within ycaQat 969.547 kb on + strand, within ycaQat 969.547 kb on + strand, within ycaQat 969.550 kb on + strand, within ycaQat 969.555 kb on - strand, within ycaQat 969.690 kb on + strand, within ycaQat 969.690 kb on + strand, within ycaQat 969.774 kb on + strandat 969.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 18 hr NoPredatorControl
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968,649 + -0.3
968,674 + +0.1
968,737 - ycaQ b0916 0.10 +0.4
968,737 - ycaQ b0916 0.10 +0.4
968,775 + ycaQ b0916 0.13 +0.1
968,775 + ycaQ b0916 0.13 +0.0
968,811 + ycaQ b0916 0.16 +0.4
968,811 + -0.5
968,863 - ycaQ b0916 0.20 +0.8
968,865 - ycaQ b0916 0.21 -0.2
968,880 + ycaQ b0916 0.22 +0.4
968,880 + ycaQ b0916 0.22 +0.6
969,033 - ycaQ b0916 0.34 +0.6
969,050 + ycaQ b0916 0.36 +0.4
969,060 - ycaQ b0916 0.36 -0.3
969,275 - ycaQ b0916 0.54 -0.0
969,282 + ycaQ b0916 0.54 +0.4
969,300 - ycaQ b0916 0.56 +0.4
969,300 - ycaQ b0916 0.56 +0.9
969,547 + ycaQ b0916 0.76 +1.7
969,547 + ycaQ b0916 0.76 +0.5
969,550 + ycaQ b0916 0.76 +0.3
969,555 - ycaQ b0916 0.76 -0.2
969,690 + ycaQ b0916 0.87 -0.0
969,690 + ycaQ b0916 0.87 +0.0
969,774 + +0.3
969,830 - -0.8

Or see this region's nucleotide sequence