Strain Fitness in Escherichia coli BW25113 around b2274

Experiment: 3 hr rep1_Tiberius_100fold_dilution

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfbN and yfbO are separated by 208 nucleotidesyfbO and yfbP are separated by 58 nucleotidesyfbP and nuoN are separated by 83 nucleotides b2273: yfbN - hypothetical protein (NCBI), at 2,385,732 to 2,386,448 yfbN b2274: yfbO - predicted protein (RefSeq), at 2,386,657 to 2,387,079 yfbO b2275: yfbP - TPR-like repeats-containing protein (NCBI), at 2,387,138 to 2,387,986 yfbP b2276: nuoN - NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq), at 2,388,070 to 2,389,527 nuoN Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -2 -1 0 1at 2386.671 kb on - strandat 2386.721 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.788 kb on - strand, within yfbOat 2386.819 kb on + strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.870 kb on - strand, within yfbOat 2386.885 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.908 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.997 kb on + strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.013 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.022 kb on + strand, within yfbOat 2387.041 kb on + strandat 2387.041 kb on + strandat 2387.044 kb on + strandat 2387.044 kb on + strandat 2387.046 kb on + strandat 2387.048 kb on + strandat 2387.048 kb on - strandat 2387.066 kb on - strandat 2387.214 kb on + strandat 2387.237 kb on + strand, within yfbPat 2387.245 kb on - strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.269 kb on - strand, within yfbPat 2387.280 kb on + strand, within yfbPat 2387.294 kb on - strand, within yfbPat 2387.297 kb on + strand, within yfbPat 2387.354 kb on + strand, within yfbPat 2387.512 kb on + strand, within yfbPat 2387.545 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.671 kb on + strand, within yfbPat 2387.675 kb on + strand, within yfbPat 2387.677 kb on + strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.791 kb on + strand, within yfbPat 2387.843 kb on - strand, within yfbPat 2387.845 kb on + strand, within yfbPat 2387.853 kb on - strand, within yfbPat 2387.981 kb on + strandat 2387.981 kb on + strandat 2387.993 kb on + strandat 2388.014 kb on - strandat 2388.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 hr rep1_Tiberius_100fold_dilution
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2,386,671 - +1.7
2,386,721 - yfbO b2274 0.15 +0.1
2,386,781 - yfbO b2274 0.29 -2.2
2,386,781 - yfbO b2274 0.29 -0.9
2,386,788 - yfbO b2274 0.31 -0.7
2,386,819 + yfbO b2274 0.38 +1.7
2,386,859 - yfbO b2274 0.48 -2.1
2,386,859 - yfbO b2274 0.48 -1.5
2,386,859 - yfbO b2274 0.48 +0.3
2,386,870 - yfbO b2274 0.50 -0.5
2,386,885 - yfbO b2274 0.54 +0.7
2,386,898 - yfbO b2274 0.57 +0.9
2,386,898 - yfbO b2274 0.57 +0.7
2,386,908 - yfbO b2274 0.59 +0.1
2,386,992 - yfbO b2274 0.79 -1.1
2,386,992 - yfbO b2274 0.79 +0.7
2,386,997 + yfbO b2274 0.80 -1.5
2,387,005 - yfbO b2274 0.82 +1.7
2,387,005 - yfbO b2274 0.82 +1.7
2,387,013 + yfbO b2274 0.84 +1.4
2,387,020 + yfbO b2274 0.86 -0.2
2,387,020 + yfbO b2274 0.86 -1.8
2,387,020 + yfbO b2274 0.86 +0.3
2,387,020 + yfbO b2274 0.86 +0.7
2,387,022 + yfbO b2274 0.86 +0.1
2,387,041 + -0.2
2,387,041 + +0.9
2,387,044 + -0.0
2,387,044 + -1.1
2,387,046 + +0.4
2,387,048 + -0.9
2,387,048 - +0.3
2,387,066 - +1.7
2,387,214 + +0.1
2,387,237 + yfbP b2275 0.12 +1.1
2,387,245 - yfbP b2275 0.13 +1.7
2,387,266 + yfbP b2275 0.15 -1.3
2,387,266 + yfbP b2275 0.15 +0.7
2,387,269 - yfbP b2275 0.15 -0.1
2,387,280 + yfbP b2275 0.17 +0.8
2,387,294 - yfbP b2275 0.18 -1.0
2,387,297 + yfbP b2275 0.19 -0.5
2,387,354 + yfbP b2275 0.25 +0.1
2,387,512 + yfbP b2275 0.44 -0.6
2,387,545 - yfbP b2275 0.48 -1.4
2,387,600 - yfbP b2275 0.54 +1.3
2,387,600 - yfbP b2275 0.54 +0.3
2,387,640 + yfbP b2275 0.59 -0.1
2,387,640 + yfbP b2275 0.59 -0.1
2,387,671 + yfbP b2275 0.63 +0.2
2,387,675 + yfbP b2275 0.63 +0.2
2,387,677 + yfbP b2275 0.63 +0.1
2,387,687 - yfbP b2275 0.65 +0.1
2,387,687 - yfbP b2275 0.65 +0.0
2,387,791 + yfbP b2275 0.77 -0.6
2,387,843 - yfbP b2275 0.83 -1.0
2,387,845 + yfbP b2275 0.83 -0.2
2,387,853 - yfbP b2275 0.84 +0.7
2,387,981 + -0.2
2,387,981 + -0.2
2,387,993 + -0.1
2,388,014 - +0.5
2,388,014 - +0.4

Or see this region's nucleotide sequence