Strain Fitness in Escherichia coli BW25113 around b0532
Experiment: 3 hr rep1_Tiberius_100fold_dilution
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 3 hr rep1_Tiberius_100fold_dilution |
---|---|---|---|---|---|
remove | |||||
557,925 | + | -0.6 | |||
557,925 | + | -0.8 | |||
557,928 | + | -3.0 | |||
557,933 | + | -3.4 | |||
557,938 | + | -2.3 | |||
557,940 | + | -0.9 | |||
557,957 | + | +0.8 | |||
557,957 | + | -2.0 | |||
558,080 | + | +0.8 | |||
558,084 | + | +1.8 | |||
558,274 | - | sfmC | b0531 | 0.11 | +1.8 |
558,320 | - | sfmC | b0531 | 0.18 | +1.8 |
558,320 | - | sfmC | b0531 | 0.18 | +0.2 |
558,332 | - | sfmC | b0531 | 0.19 | +0.8 |
558,334 | + | sfmC | b0531 | 0.20 | +1.8 |
558,383 | + | sfmC | b0531 | 0.27 | -3.1 |
558,404 | - | sfmC | b0531 | 0.30 | +1.8 |
558,425 | - | sfmC | b0531 | 0.33 | +1.8 |
558,439 | - | sfmC | b0531 | 0.35 | +0.8 |
558,480 | - | sfmC | b0531 | 0.41 | +1.6 |
558,480 | - | sfmC | b0531 | 0.41 | +0.0 |
558,480 | - | sfmC | b0531 | 0.41 | -1.4 |
558,488 | - | sfmC | b0531 | 0.42 | -0.3 |
558,501 | - | sfmC | b0531 | 0.44 | -0.1 |
558,517 | + | sfmC | b0531 | 0.46 | +1.8 |
558,539 | + | sfmC | b0531 | 0.49 | +0.8 |
558,556 | - | sfmC | b0531 | 0.52 | +0.8 |
558,650 | - | sfmC | b0531 | 0.65 | +0.4 |
558,659 | - | sfmC | b0531 | 0.67 | +0.7 |
558,693 | - | sfmC | b0531 | 0.72 | -2.7 |
558,695 | - | sfmC | b0531 | 0.72 | +1.8 |
558,695 | - | sfmC | b0531 | 0.72 | +1.2 |
558,695 | - | sfmC | b0531 | 0.72 | -0.2 |
558,719 | - | sfmC | b0531 | 0.75 | -0.8 |
558,719 | - | sfmC | b0531 | 0.75 | -0.8 |
558,722 | + | sfmC | b0531 | 0.76 | +0.3 |
558,722 | + | sfmC | b0531 | 0.76 | -0.5 |
558,733 | - | sfmC | b0531 | 0.77 | -1.0 |
558,735 | - | sfmC | b0531 | 0.78 | -0.7 |
558,740 | - | sfmC | b0531 | 0.78 | -1.9 |
558,740 | - | sfmC | b0531 | 0.78 | -0.5 |
558,755 | - | sfmC | b0531 | 0.81 | +1.8 |
558,763 | + | sfmC | b0531 | 0.82 | +1.8 |
558,763 | + | sfmC | b0531 | 0.82 | +1.8 |
558,763 | + | sfmC | b0531 | 0.82 | +1.8 |
558,771 | - | sfmC | b0531 | 0.83 | +0.8 |
558,771 | - | sfmC | b0531 | 0.83 | +1.8 |
558,771 | - | sfmC | b0531 | 0.83 | +1.8 |
558,774 | + | sfmC | b0531 | 0.83 | +0.8 |
558,775 | + | sfmC | b0531 | 0.83 | +1.8 |
558,810 | - | sfmC | b0531 | 0.88 | -1.2 |
558,812 | + | sfmC | b0531 | 0.89 | +1.8 |
558,812 | + | sfmC | b0531 | 0.89 | +1.8 |
558,812 | + | sfmC | b0531 | 0.89 | +1.8 |
558,812 | + | sfmC | b0531 | 0.89 | +1.8 |
558,820 | - | -0.6 | |||
558,852 | + | +1.8 | |||
558,852 | + | +0.5 | |||
558,855 | + | +1.8 | |||
558,906 | + | -0.0 | |||
558,939 | - | +0.8 | |||
558,955 | + | +0.8 | |||
558,960 | - | -1.5 | |||
559,010 | + | +1.8 | |||
559,010 | + | -0.2 | |||
559,102 | + | +1.8 | |||
559,110 | - | +1.8 | |||
559,110 | - | -1.7 | |||
559,110 | - | -0.0 | |||
559,110 | - | +0.1 | |||
559,145 | + | -0.8 | |||
559,146 | - | -1.2 | |||
559,178 | + | +0.2 | |||
559,211 | + | sfmD | b0532 | 0.11 | +1.8 |
559,227 | + | sfmD | b0532 | 0.12 | +1.8 |
559,227 | + | sfmD | b0532 | 0.12 | +1.8 |
559,261 | + | sfmD | b0532 | 0.13 | +1.8 |
559,384 | + | sfmD | b0532 | 0.18 | +0.2 |
559,414 | + | sfmD | b0532 | 0.19 | -1.0 |
559,416 | + | sfmD | b0532 | 0.19 | +0.8 |
559,416 | + | sfmD | b0532 | 0.19 | +1.8 |
559,420 | + | sfmD | b0532 | 0.19 | -1.5 |
559,420 | + | sfmD | b0532 | 0.19 | +1.8 |
559,420 | + | sfmD | b0532 | 0.19 | +0.8 |
559,422 | - | sfmD | b0532 | 0.19 | +1.8 |
559,425 | + | sfmD | b0532 | 0.19 | -0.2 |
559,433 | + | sfmD | b0532 | 0.20 | +2.3 |
559,439 | + | sfmD | b0532 | 0.20 | +1.5 |
559,454 | + | sfmD | b0532 | 0.21 | +1.8 |
559,569 | - | sfmD | b0532 | 0.25 | +1.8 |
559,659 | - | sfmD | b0532 | 0.28 | -1.0 |
559,664 | - | sfmD | b0532 | 0.29 | +1.8 |
559,777 | - | sfmD | b0532 | 0.33 | +1.8 |
559,784 | - | sfmD | b0532 | 0.33 | +1.8 |
559,792 | - | sfmD | b0532 | 0.33 | -0.2 |
559,794 | - | sfmD | b0532 | 0.34 | +0.8 |
559,797 | + | sfmD | b0532 | 0.34 | +1.8 |
559,798 | + | sfmD | b0532 | 0.34 | +0.2 |
559,799 | - | sfmD | b0532 | 0.34 | +1.8 |
559,801 | + | sfmD | b0532 | 0.34 | +0.8 |
559,805 | - | sfmD | b0532 | 0.34 | +1.8 |
559,805 | - | sfmD | b0532 | 0.34 | +1.8 |
559,805 | - | sfmD | b0532 | 0.34 | +1.8 |
559,812 | + | sfmD | b0532 | 0.34 | +0.8 |
559,913 | + | sfmD | b0532 | 0.38 | -0.8 |
559,919 | - | sfmD | b0532 | 0.38 | +1.8 |
559,940 | + | sfmD | b0532 | 0.39 | +0.8 |
559,966 | + | sfmD | b0532 | 0.40 | -1.2 |
559,974 | - | sfmD | b0532 | 0.40 | -1.9 |
560,096 | - | sfmD | b0532 | 0.45 | -0.7 |
560,096 | - | sfmD | b0532 | 0.45 | +2.3 |
560,096 | - | sfmD | b0532 | 0.45 | +1.8 |
560,109 | - | sfmD | b0532 | 0.46 | +0.1 |
560,161 | + | sfmD | b0532 | 0.48 | +1.8 |
560,174 | + | sfmD | b0532 | 0.48 | +0.2 |
560,174 | + | sfmD | b0532 | 0.48 | +0.8 |
560,182 | + | sfmD | b0532 | 0.48 | -1.9 |
560,182 | - | sfmD | b0532 | 0.48 | -0.4 |
560,192 | + | sfmD | b0532 | 0.49 | -1.1 |
560,192 | + | sfmD | b0532 | 0.49 | -1.2 |
560,192 | + | sfmD | b0532 | 0.49 | -1.5 |
560,192 | + | sfmD | b0532 | 0.49 | -1.0 |
560,192 | + | sfmD | b0532 | 0.49 | +0.6 |
560,192 | + | sfmD | b0532 | 0.49 | -0.5 |
560,192 | + | sfmD | b0532 | 0.49 | +1.8 |
560,194 | + | sfmD | b0532 | 0.49 | +0.2 |
560,198 | - | sfmD | b0532 | 0.49 | -0.0 |
560,198 | - | sfmD | b0532 | 0.49 | -1.0 |
560,198 | - | sfmD | b0532 | 0.49 | -0.5 |
560,200 | + | sfmD | b0532 | 0.49 | -0.8 |
560,200 | - | sfmD | b0532 | 0.49 | -2.2 |
560,202 | + | sfmD | b0532 | 0.49 | -1.0 |
560,202 | + | sfmD | b0532 | 0.49 | -0.2 |
560,205 | - | sfmD | b0532 | 0.49 | -0.2 |
560,208 | - | sfmD | b0532 | 0.49 | -0.5 |
560,208 | - | sfmD | b0532 | 0.49 | +1.2 |
560,222 | + | sfmD | b0532 | 0.50 | -2.5 |
560,222 | + | sfmD | b0532 | 0.50 | -0.7 |
560,226 | - | sfmD | b0532 | 0.50 | -0.3 |
560,256 | + | sfmD | b0532 | 0.51 | +1.1 |
560,267 | + | sfmD | b0532 | 0.52 | +1.6 |
560,323 | - | sfmD | b0532 | 0.54 | +0.8 |
560,323 | - | sfmD | b0532 | 0.54 | +1.2 |
560,346 | + | sfmD | b0532 | 0.55 | -2.3 |
560,355 | + | sfmD | b0532 | 0.55 | -2.3 |
560,375 | + | sfmD | b0532 | 0.56 | +0.2 |
560,378 | - | sfmD | b0532 | 0.56 | +1.8 |
560,390 | + | sfmD | b0532 | 0.56 | +0.2 |
560,390 | + | sfmD | b0532 | 0.56 | -2.8 |
560,399 | + | sfmD | b0532 | 0.57 | -1.3 |
560,452 | - | sfmD | b0532 | 0.59 | +0.2 |
560,486 | - | sfmD | b0532 | 0.60 | -0.2 |
560,556 | - | sfmD | b0532 | 0.63 | -2.3 |
560,556 | - | sfmD | b0532 | 0.63 | +0.8 |
560,568 | + | sfmD | b0532 | 0.63 | +0.2 |
560,569 | + | sfmD | b0532 | 0.63 | +2.4 |
560,569 | + | sfmD | b0532 | 0.63 | +0.8 |
560,570 | + | sfmD | b0532 | 0.63 | +0.2 |
560,570 | + | sfmD | b0532 | 0.63 | -1.0 |
560,573 | + | sfmD | b0532 | 0.63 | +1.8 |
560,576 | - | sfmD | b0532 | 0.64 | -0.4 |
560,576 | - | sfmD | b0532 | 0.64 | -0.6 |
560,577 | - | sfmD | b0532 | 0.64 | +0.5 |
560,580 | - | sfmD | b0532 | 0.64 | -0.3 |
560,580 | - | sfmD | b0532 | 0.64 | -1.4 |
560,581 | - | sfmD | b0532 | 0.64 | -1.3 |
560,581 | - | sfmD | b0532 | 0.64 | -0.5 |
560,581 | - | sfmD | b0532 | 0.64 | +0.5 |
560,599 | - | sfmD | b0532 | 0.64 | -0.7 |
560,599 | - | sfmD | b0532 | 0.64 | -1.4 |
560,628 | + | sfmD | b0532 | 0.66 | +0.8 |
560,628 | + | sfmD | b0532 | 0.66 | +1.1 |
560,631 | - | sfmD | b0532 | 0.66 | -0.8 |
560,633 | + | sfmD | b0532 | 0.66 | -1.9 |
560,658 | + | sfmD | b0532 | 0.67 | -0.7 |
560,704 | + | sfmD | b0532 | 0.69 | -1.0 |
560,744 | - | sfmD | b0532 | 0.70 | -0.9 |
560,748 | - | sfmD | b0532 | 0.70 | +0.0 |
560,754 | - | sfmD | b0532 | 0.70 | -0.6 |
560,755 | - | sfmD | b0532 | 0.70 | +0.2 |
560,801 | - | sfmD | b0532 | 0.72 | -0.6 |
560,805 | - | sfmD | b0532 | 0.72 | -0.2 |
560,814 | - | sfmD | b0532 | 0.73 | -0.9 |
560,816 | - | sfmD | b0532 | 0.73 | -2.0 |
560,829 | + | sfmD | b0532 | 0.73 | +0.1 |
560,840 | + | sfmD | b0532 | 0.74 | +1.1 |
560,847 | - | sfmD | b0532 | 0.74 | +0.7 |
560,848 | - | sfmD | b0532 | 0.74 | -0.4 |
560,891 | - | sfmD | b0532 | 0.76 | -0.5 |
560,909 | + | sfmD | b0532 | 0.76 | +0.2 |
560,927 | + | sfmD | b0532 | 0.77 | -1.1 |
560,927 | + | -0.2 | |||
560,929 | - | sfmD | b0532 | 0.77 | +0.2 |
560,929 | - | sfmD | b0532 | 0.77 | -0.5 |
560,963 | + | sfmD | b0532 | 0.78 | +0.1 |
560,963 | + | sfmD | b0532 | 0.78 | -0.2 |
560,971 | - | sfmD | b0532 | 0.79 | -0.4 |
560,971 | - | sfmD | b0532 | 0.79 | +0.6 |
561,019 | - | sfmD | b0532 | 0.81 | +0.4 |
561,055 | - | sfmD | b0532 | 0.82 | -0.5 |
561,056 | - | sfmD | b0532 | 0.82 | -0.2 |
561,123 | - | sfmD | b0532 | 0.85 | +0.8 |
561,123 | - | sfmD | b0532 | 0.85 | +0.2 |
561,149 | - | sfmD | b0532 | 0.86 | -0.5 |
561,204 | + | sfmD | b0532 | 0.88 | +0.9 |
561,204 | + | sfmD | b0532 | 0.88 | -0.4 |
561,217 | - | sfmD | b0532 | 0.88 | +0.3 |
561,248 | - | sfmD | b0532 | 0.89 | +0.2 |
561,252 | + | sfmD | b0532 | 0.90 | -0.5 |
561,252 | + | sfmD | b0532 | 0.90 | -0.1 |
561,252 | + | sfmD | b0532 | 0.90 | -0.4 |
561,252 | + | sfmD | b0532 | 0.90 | -0.3 |
561,270 | + | -2.0 | |||
561,270 | + | -1.6 | |||
561,276 | + | +1.2 | |||
561,276 | + | -0.5 | |||
561,279 | - | +1.8 | |||
561,279 | - | -0.2 | |||
561,309 | + | -0.3 | |||
561,311 | + | -0.2 | |||
561,347 | + | -0.1 | |||
561,347 | + | +0.1 | |||
561,351 | - | +0.8 | |||
561,399 | + | -0.2 | |||
561,399 | - | -1.7 | |||
561,410 | + | -1.6 | |||
561,412 | + | -2.2 | |||
561,412 | + | -0.1 | |||
561,415 | + | +1.0 | |||
561,415 | + | -1.9 | |||
561,415 | - | +0.8 | |||
561,420 | - | +1.8 | |||
561,422 | + | -1.7 | |||
561,422 | + | -0.3 | |||
561,433 | + | +0.0 | |||
561,433 | + | -1.0 | |||
561,433 | + | +0.4 | |||
561,441 | - | +1.8 | |||
561,445 | + | +0.2 | |||
561,445 | + | -1.5 | |||
561,448 | + | -0.0 | |||
561,448 | + | +2.4 | |||
561,448 | + | +0.6 | |||
561,468 | + | +0.4 | |||
561,509 | + | -0.6 | |||
561,623 | + | -1.1 | |||
561,634 | + | -0.8 | |||
561,634 | + | +1.2 | |||
561,680 | + | sfmH | b0533 | 0.12 | -0.5 |
561,726 | + | sfmH | b0533 | 0.17 | -0.5 |
561,726 | + | sfmH | b0533 | 0.17 | -0.2 |
561,726 | + | sfmH | b0533 | 0.17 | +1.8 |
561,745 | + | sfmH | b0533 | 0.19 | +0.4 |
561,745 | + | sfmH | b0533 | 0.19 | -0.4 |
561,747 | + | sfmH | b0533 | 0.19 | -1.5 |
561,749 | + | sfmH | b0533 | 0.19 | -0.5 |
561,761 | + | sfmH | b0533 | 0.21 | -0.2 |
561,761 | + | sfmH | b0533 | 0.21 | +0.2 |
561,920 | - | sfmH | b0533 | 0.37 | +1.8 |
562,008 | - | sfmH | b0533 | 0.46 | +0.1 |
562,008 | - | sfmH | b0533 | 0.46 | -1.0 |
562,008 | - | sfmH | b0533 | 0.46 | -1.8 |
562,018 | - | sfmH | b0533 | 0.47 | -0.8 |
562,027 | - | sfmH | b0533 | 0.48 | +0.4 |
562,027 | - | sfmH | b0533 | 0.48 | -2.1 |
562,027 | - | sfmH | b0533 | 0.48 | -1.3 |
562,027 | - | sfmH | b0533 | 0.48 | -0.7 |
562,027 | - | sfmH | b0533 | 0.48 | -1.6 |
562,028 | - | sfmH | b0533 | 0.48 | -0.5 |
562,037 | - | sfmH | b0533 | 0.49 | -0.2 |
562,037 | - | sfmH | b0533 | 0.49 | -2.1 |
562,038 | - | sfmH | b0533 | 0.49 | +0.3 |
562,038 | - | sfmH | b0533 | 0.49 | -1.5 |
562,042 | - | sfmH | b0533 | 0.49 | -1.9 |
562,044 | + | sfmH | b0533 | 0.49 | +1.8 |
562,050 | - | sfmH | b0533 | 0.50 | -2.2 |
562,054 | - | sfmH | b0533 | 0.50 | +0.8 |
562,054 | - | sfmH | b0533 | 0.50 | -0.5 |
562,058 | - | sfmH | b0533 | 0.51 | -0.2 |
562,060 | + | sfmH | b0533 | 0.51 | -1.2 |
562,060 | - | sfmH | b0533 | 0.51 | +0.2 |
562,060 | - | sfmH | b0533 | 0.51 | +0.2 |
562,067 | + | sfmH | b0533 | 0.52 | +2.8 |
562,067 | + | sfmH | b0533 | 0.52 | -1.4 |
562,118 | - | sfmH | b0533 | 0.57 | +0.5 |
562,191 | - | sfmH | b0533 | 0.64 | -0.7 |
562,191 | - | sfmH | b0533 | 0.64 | +0.2 |
562,191 | - | sfmH | b0533 | 0.64 | -1.1 |
562,191 | - | sfmH | b0533 | 0.64 | -0.5 |
562,191 | - | sfmH | b0533 | 0.64 | -1.3 |
562,217 | + | sfmH | b0533 | 0.67 | +2.8 |
562,222 | - | sfmH | b0533 | 0.67 | -0.9 |
562,223 | - | sfmH | b0533 | 0.67 | -2.7 |
562,227 | - | sfmH | b0533 | 0.68 | -2.7 |
562,228 | + | sfmH | b0533 | 0.68 | -1.4 |
562,231 | + | sfmH | b0533 | 0.68 | +0.2 |
562,303 | - | sfmH | b0533 | 0.76 | +0.6 |
562,312 | + | sfmH | b0533 | 0.77 | -0.5 |
562,312 | + | sfmH | b0533 | 0.77 | +0.7 |
562,331 | - | sfmH | b0533 | 0.78 | +1.8 |
562,331 | - | sfmH | b0533 | 0.78 | -1.0 |
562,334 | + | sfmH | b0533 | 0.79 | +2.1 |
562,386 | + | sfmH | b0533 | 0.84 | -0.4 |
562,445 | + | +0.3 | |||
562,445 | + | +0.4 | |||
562,457 | + | -0.0 |
Or see this region's nucleotide sequence