Experiment: 48 hr rep2_Tiberius_no_dilution
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1695 and ydiP are separated by 42 nucleotides ydiP and ydiQ are separated by 315 nucleotides
b1695: b1695 - putative oxidoreductase (VIMSS), at 1,775,220 to 1,776,371
b1695
b1696: ydiP - predicted DNA-binding transcriptional regulator (NCBI), at 1,776,414 to 1,777,325
ydiP
b1697: ydiQ - hypothetical protein (NCBI), at 1,777,641 to 1,778,405
ydiQ
Position (kb)
1776
1777
1778 Strain fitness (log2 ratio)
-2
-1
0
1 at 1775.427 kb on - strand, within b1695 at 1775.581 kb on - strand, within b1695 at 1775.657 kb on + strand, within b1695 at 1775.858 kb on - strand, within b1695 at 1776.002 kb on + strand, within b1695 at 1776.174 kb on + strand, within b1695 at 1776.176 kb on + strand, within b1695 at 1776.239 kb on + strand, within b1695 at 1776.293 kb on + strand at 1776.326 kb on + strand at 1776.356 kb on + strand at 1776.356 kb on + strand at 1776.411 kb on + strand at 1776.485 kb on + strand at 1776.538 kb on - strand, within ydiP at 1776.538 kb on - strand, within ydiP at 1776.867 kb on - strand, within ydiP at 1777.038 kb on - strand, within ydiP at 1777.038 kb on - strand, within ydiP at 1777.038 kb on - strand, within ydiP at 1777.216 kb on + strand, within ydiP at 1777.304 kb on + strand at 1777.341 kb on - strand at 1777.347 kb on - strand at 1777.355 kb on + strand at 1777.413 kb on - strand at 1777.413 kb on - strand at 1777.449 kb on + strand at 1777.456 kb on + strand at 1777.548 kb on - strand at 1777.564 kb on + strand at 1777.618 kb on + strand at 1777.685 kb on - strand at 1777.690 kb on - strand at 1777.700 kb on + strand at 1777.704 kb on - strand at 1777.776 kb on - strand, within ydiQ at 1777.865 kb on - strand, within ydiQ at 1777.917 kb on - strand, within ydiQ at 1778.003 kb on + strand, within ydiQ at 1778.059 kb on + strand, within ydiQ at 1778.071 kb on + strand, within ydiQ at 1778.071 kb on + strand, within ydiQ at 1778.071 kb on + strand, within ydiQ at 1778.294 kb on + strand, within ydiQ
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hr rep2_Tiberius_no_dilution remove 1,775,427 - b1695 b1695 0.18 -0.0 1,775,581 - b1695 b1695 0.31 +0.5 1,775,657 + b1695 b1695 0.38 +0.2 1,775,858 - b1695 b1695 0.55 -0.5 1,776,002 + b1695 b1695 0.68 -0.2 1,776,174 + b1695 b1695 0.83 +0.6 1,776,176 + b1695 b1695 0.83 +0.5 1,776,239 + b1695 b1695 0.88 +0.6 1,776,293 + -0.1 1,776,326 + +0.2 1,776,356 + +0.1 1,776,356 + -1.0 1,776,411 + -1.3 1,776,485 + +0.7 1,776,538 - ydiP b1696 0.14 -2.0 1,776,538 - ydiP b1696 0.14 -1.6 1,776,867 - ydiP b1696 0.50 -0.0 1,777,038 - ydiP b1696 0.68 -0.4 1,777,038 - ydiP b1696 0.68 +0.1 1,777,038 - ydiP b1696 0.68 -0.3 1,777,216 + ydiP b1696 0.88 +0.7 1,777,304 + -1.6 1,777,341 - -0.1 1,777,347 - -0.1 1,777,355 + -1.3 1,777,413 - -1.1 1,777,413 - -0.2 1,777,449 + +0.7 1,777,456 + -1.6 1,777,548 - -0.1 1,777,564 + -1.1 1,777,618 + +0.8 1,777,685 - +0.3 1,777,690 - -0.5 1,777,700 + +1.1 1,777,704 - -0.2 1,777,776 - ydiQ b1697 0.18 +0.1 1,777,865 - ydiQ b1697 0.29 +0.4 1,777,917 - ydiQ b1697 0.36 +0.0 1,778,003 + ydiQ b1697 0.47 +0.6 1,778,059 + ydiQ b1697 0.55 +0.4 1,778,071 + ydiQ b1697 0.56 +0.4 1,778,071 + ydiQ b1697 0.56 +0.8 1,778,071 + ydiQ b1697 0.56 +0.2 1,778,294 + ydiQ b1697 0.85 -0.0
Or see this region's nucleotide sequence