Experiment: 48 hr rep2_Tiberius_no_dilution
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmr and ybjH are separated by 40 nucleotides ybjH and b0844 are separated by 85 nucleotides b0844 and ybjJ overlap by 1 nucleotides
b0842: cmr - multidrug efflux system protein (NCBI), at 882,896 to 884,128
cmr
b0843: ybjH - hypothetical protein (NCBI), at 884,169 to 884,453
ybjH
b0844: b0844 - orf, hypothetical protein (VIMSS), at 884,539 to 885,354
b0844
b0845: ybjJ - predicted transporter (NCBI), at 885,354 to 886,562
ybjJ
Position (kb) 884
885 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 883.338 kb on - strand, within cmr at 883.528 kb on + strand, within cmr at 883.528 kb on + strand, within cmr at 883.528 kb on + strand, within cmr at 883.594 kb on + strand, within cmr at 883.725 kb on - strand, within cmr at 883.725 kb on - strand, within cmr at 883.777 kb on + strand, within cmr at 883.798 kb on - strand, within cmr at 883.798 kb on - strand, within cmr at 883.838 kb on - strand, within cmr at 883.872 kb on + strand, within cmr at 883.872 kb on + strand, within cmr at 883.927 kb on + strand, within cmr at 883.961 kb on + strand, within cmr at 883.961 kb on + strand, within cmr at 884.023 kb on - strand at 884.041 kb on + strand at 884.041 kb on + strand at 884.095 kb on + strand at 884.146 kb on - strand at 884.299 kb on + strand, within ybjH at 884.355 kb on + strand, within ybjH at 884.355 kb on + strand, within ybjH at 884.502 kb on + strand at 884.523 kb on - strand at 884.553 kb on - strand at 884.594 kb on + strand at 884.613 kb on - strand at 884.613 kb on - strand at 884.674 kb on + strand, within b0844 at 884.692 kb on + strand, within b0844 at 884.713 kb on + strand, within b0844 at 884.789 kb on - strand, within b0844 at 884.807 kb on + strand, within b0844 at 884.815 kb on - strand, within b0844 at 884.833 kb on + strand, within b0844 at 884.835 kb on + strand, within b0844 at 884.956 kb on - strand, within b0844 at 884.956 kb on - strand, within b0844 at 885.073 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.105 kb on - strand, within b0844 at 885.133 kb on + strand, within b0844 at 885.226 kb on + strand, within b0844 at 885.231 kb on + strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.280 kb on - strand at 885.280 kb on - strand at 885.296 kb on - strand at 885.320 kb on - strand at 885.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hr rep2_Tiberius_no_dilution remove 883,338 - cmr b0842 0.36 -0.6 883,528 + cmr b0842 0.51 +0.4 883,528 + cmr b0842 0.51 +0.2 883,528 + cmr b0842 0.51 -0.1 883,594 + cmr b0842 0.57 -0.2 883,725 - cmr b0842 0.67 +0.7 883,725 - cmr b0842 0.67 -0.2 883,777 + cmr b0842 0.71 +0.2 883,798 - cmr b0842 0.73 -0.7 883,798 - cmr b0842 0.73 +0.4 883,838 - cmr b0842 0.76 -0.3 883,872 + cmr b0842 0.79 +0.2 883,872 + cmr b0842 0.79 +0.5 883,927 + cmr b0842 0.84 +0.4 883,961 + cmr b0842 0.86 +0.6 883,961 + cmr b0842 0.86 +0.0 884,023 - +0.3 884,041 + +0.4 884,041 + +0.1 884,095 + +0.0 884,146 - -0.9 884,299 + ybjH b0843 0.46 -0.9 884,355 + ybjH b0843 0.65 -0.2 884,355 + ybjH b0843 0.65 -2.1 884,502 + +0.5 884,523 - +0.1 884,553 - -2.0 884,594 + -2.1 884,613 - +0.5 884,613 - +0.7 884,674 + b0844 b0844 0.17 +0.9 884,692 + b0844 b0844 0.19 -0.0 884,713 + b0844 b0844 0.21 -1.4 884,789 - b0844 b0844 0.31 -0.2 884,807 + b0844 b0844 0.33 -0.4 884,815 - b0844 b0844 0.34 -0.7 884,833 + b0844 b0844 0.36 +0.7 884,835 + b0844 b0844 0.36 +0.3 884,956 - b0844 b0844 0.51 +1.4 884,956 - b0844 b0844 0.51 +0.2 885,073 + b0844 b0844 0.65 +1.1 885,095 + b0844 b0844 0.68 -1.1 885,095 + b0844 b0844 0.68 -1.7 885,095 + b0844 b0844 0.68 +3.9 885,105 - b0844 b0844 0.69 +0.2 885,133 + b0844 b0844 0.73 -0.9 885,226 + b0844 b0844 0.84 -0.5 885,231 + b0844 b0844 0.85 -0.7 885,245 - b0844 b0844 0.87 -0.4 885,245 - b0844 b0844 0.87 +0.5 885,245 - b0844 b0844 0.87 -0.1 885,268 - b0844 b0844 0.89 +0.7 885,268 - b0844 b0844 0.89 -0.6 885,272 + b0844 b0844 0.90 -1.0 885,272 + b0844 b0844 0.90 +0.3 885,272 + b0844 b0844 0.90 -0.5 885,280 - +0.4 885,280 - +0.2 885,296 - +0.2 885,320 - +0.7 885,350 - +0.4
Or see this region's nucleotide sequence