Experiment: 48 hr NoPredatorControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cusS and cusR overlap by 11 nucleotides cusR and cusC are separated by 156 nucleotides
b0570: cusS - sensory histidine kinase in two-component regulatory system with CusR, senses copper ions (NCBI), at 592,551 to 593,993
cusS
b0571: cusR - DNA-binding response regulator in two-component regulatory system with CusS (NCBI), at 593,983 to 594,666
cusR
b0572: cusC - copper/silver efflux system, outer membrane component (NCBI), at 594,823 to 596,196
cusC
Position (kb) 593
594
595 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.025 kb on - strand, within cusS at 593.031 kb on - strand, within cusS at 593.083 kb on + strand, within cusS at 593.091 kb on + strand, within cusS at 593.091 kb on + strand, within cusS at 593.248 kb on - strand, within cusS at 593.368 kb on + strand, within cusS at 593.496 kb on - strand, within cusS at 593.587 kb on + strand, within cusS at 593.611 kb on - strand, within cusS at 593.646 kb on - strand, within cusS at 593.694 kb on - strand, within cusS at 593.694 kb on - strand, within cusS at 593.704 kb on + strand, within cusS at 593.710 kb on - strand, within cusS at 593.887 kb on + strand at 594.000 kb on + strand at 594.000 kb on + strand at 594.001 kb on + strand at 594.001 kb on - strand at 594.149 kb on - strand, within cusR at 594.149 kb on - strand, within cusR at 594.200 kb on - strand, within cusR at 594.200 kb on - strand, within cusR at 594.209 kb on - strand, within cusR at 594.209 kb on - strand, within cusR at 594.219 kb on - strand, within cusR at 594.219 kb on - strand, within cusR at 594.343 kb on - strand, within cusR at 594.460 kb on - strand, within cusR at 594.460 kb on - strand, within cusR at 594.474 kb on - strand, within cusR at 594.515 kb on - strand, within cusR at 594.557 kb on + strand, within cusR at 594.557 kb on + strand, within cusR at 594.723 kb on - strand at 594.743 kb on - strand at 594.895 kb on - strand at 594.952 kb on - strand at 595.041 kb on + strand, within cusC at 595.125 kb on + strand, within cusC at 595.213 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.239 kb on + strand, within cusC at 595.247 kb on - strand, within cusC at 595.251 kb on + strand, within cusC at 595.251 kb on + strand, within cusC at 595.253 kb on + strand, within cusC at 595.294 kb on - strand, within cusC at 595.361 kb on - strand, within cusC at 595.361 kb on - strand, within cusC at 595.405 kb on - strand, within cusC at 595.409 kb on + strand, within cusC at 595.459 kb on - strand, within cusC at 595.478 kb on - strand, within cusC at 595.480 kb on - strand, within cusC at 595.481 kb on - strand, within cusC at 595.481 kb on - strand, within cusC at 595.487 kb on + strand, within cusC at 595.488 kb on - strand, within cusC at 595.495 kb on - strand, within cusC at 595.495 kb on - strand, within cusC at 595.516 kb on - strand, within cusC at 595.533 kb on + strand, within cusC at 595.533 kb on + strand, within cusC at 595.584 kb on + strand, within cusC at 595.592 kb on + strand, within cusC at 595.592 kb on + strand, within cusC at 595.592 kb on - strand, within cusC at 595.594 kb on + strand, within cusC at 595.597 kb on + strand, within cusC
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hr NoPredatorControl remove 593,025 - cusS b0570 0.33 +0.1 593,031 - cusS b0570 0.33 -0.2 593,083 + cusS b0570 0.37 -0.4 593,091 + cusS b0570 0.37 +0.2 593,091 + cusS b0570 0.37 +0.5 593,248 - cusS b0570 0.48 -0.1 593,368 + cusS b0570 0.57 -0.1 593,496 - cusS b0570 0.65 -0.3 593,587 + cusS b0570 0.72 +0.3 593,611 - cusS b0570 0.73 +0.0 593,646 - cusS b0570 0.76 -0.2 593,694 - cusS b0570 0.79 +1.9 593,694 - cusS b0570 0.79 +0.4 593,704 + cusS b0570 0.80 -0.1 593,710 - cusS b0570 0.80 -0.3 593,887 + -0.4 594,000 + -0.1 594,000 + -0.3 594,001 + -0.0 594,001 - +1.0 594,149 - cusR b0571 0.24 -2.0 594,149 - cusR b0571 0.24 +0.4 594,200 - cusR b0571 0.32 -1.0 594,200 - cusR b0571 0.32 +0.5 594,209 - cusR b0571 0.33 -0.4 594,209 - cusR b0571 0.33 -0.8 594,219 - cusR b0571 0.35 -0.5 594,219 - cusR b0571 0.35 -0.1 594,343 - cusR b0571 0.53 +0.0 594,460 - cusR b0571 0.70 -0.1 594,460 - cusR b0571 0.70 -0.4 594,474 - cusR b0571 0.72 -0.5 594,515 - cusR b0571 0.78 -1.5 594,557 + cusR b0571 0.84 -0.5 594,557 + cusR b0571 0.84 -0.3 594,723 - -0.3 594,743 - -0.3 594,895 - -0.6 594,952 - +1.4 595,041 + cusC b0572 0.16 -0.0 595,125 + cusC b0572 0.22 -0.7 595,213 + cusC b0572 0.28 +0.4 595,239 + cusC b0572 0.30 +0.4 595,239 + cusC b0572 0.30 +0.5 595,239 + cusC b0572 0.30 -0.0 595,247 - cusC b0572 0.31 +0.2 595,251 + cusC b0572 0.31 -0.6 595,251 + cusC b0572 0.31 +0.0 595,253 + cusC b0572 0.31 +0.1 595,294 - cusC b0572 0.34 -0.0 595,361 - cusC b0572 0.39 +0.5 595,361 - cusC b0572 0.39 -0.8 595,405 - cusC b0572 0.42 +0.7 595,409 + cusC b0572 0.43 +0.1 595,459 - cusC b0572 0.46 +0.1 595,478 - cusC b0572 0.48 +1.5 595,480 - cusC b0572 0.48 -0.7 595,481 - cusC b0572 0.48 -0.1 595,481 - cusC b0572 0.48 +1.5 595,487 + cusC b0572 0.48 +0.3 595,488 - cusC b0572 0.48 -1.1 595,495 - cusC b0572 0.49 -1.4 595,495 - cusC b0572 0.49 +0.4 595,516 - cusC b0572 0.50 -0.3 595,533 + cusC b0572 0.52 +0.3 595,533 + cusC b0572 0.52 +0.7 595,584 + cusC b0572 0.55 -0.1 595,592 + cusC b0572 0.56 +0.3 595,592 + cusC b0572 0.56 +0.5 595,592 - cusC b0572 0.56 -0.4 595,594 + cusC b0572 0.56 -0.6 595,597 + cusC b0572 0.56 +0.6
Or see this region's nucleotide sequence