Strain Fitness in Escherichia coli BW25113 around b4580
Experiment: 48 hr rep1_HD100_no_dilution
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 48 hr rep1_HD100_no_dilution |
---|---|---|---|---|---|
remove | |||||
388,942 | + | -0.8 | |||
388,947 | + | +0.5 | |||
388,947 | + | +0.5 | |||
388,947 | + | +0.5 | |||
388,986 | + | +0.5 | |||
388,992 | - | -0.4 | |||
388,992 | - | +0.1 | |||
388,992 | - | +0.4 | |||
388,992 | - | -0.2 | |||
388,992 | - | +0.7 | |||
388,992 | - | +0.8 | |||
388,993 | - | -1.2 | |||
388,994 | - | -0.8 | |||
389,000 | + | +0.4 | |||
389,000 | + | +0.1 | |||
389,008 | - | +1.1 | |||
389,008 | - | +1.4 | |||
389,032 | + | +0.4 | |||
389,035 | + | +0.8 | |||
389,057 | + | +0.8 | |||
389,158 | + | +1.4 | |||
389,465 | - | +1.4 | |||
389,468 | - | -0.9 | |||
389,488 | - | +1.4 | |||
389,520 | + | +1.4 | |||
389,539 | - | +1.4 | |||
389,540 | + | +0.7 | |||
389,541 | + | -2.2 | |||
389,541 | + | -1.9 | |||
389,546 | + | +0.1 | |||
389,546 | + | +1.4 | |||
389,546 | + | -0.6 | |||
389,546 | + | +2.4 | |||
389,546 | + | +0.8 | |||
389,549 | - | +1.4 | |||
389,554 | - | +3.0 | |||
389,554 | - | +1.4 | |||
389,554 | - | +1.4 | |||
389,554 | - | +1.4 | |||
389,554 | - | +1.4 | |||
389,559 | + | +0.3 | |||
389,569 | - | +1.4 | |||
389,573 | + | -0.9 | |||
389,573 | + | -0.6 | |||
389,573 | + | +0.1 | |||
389,603 | + | -0.9 | |||
389,604 | + | -1.1 | |||
389,612 | - | +1.4 | |||
389,612 | - | +1.4 | |||
389,613 | + | +1.4 | |||
389,613 | + | +0.4 | |||
389,618 | + | -0.1 | |||
389,621 | - | yaiT | b4580 | 0.10 | +1.4 |
389,629 | + | yaiT | b4580 | 0.11 | -0.6 |
389,629 | + | yaiT | b4580 | 0.11 | -0.9 |
389,629 | + | yaiT | b4580 | 0.11 | +0.9 |
389,629 | + | yaiT | b4580 | 0.11 | -1.4 |
389,632 | + | yaiT | b4580 | 0.11 | -0.9 |
389,632 | + | yaiT | b4580 | 0.11 | +0.9 |
389,632 | + | yaiT | b4580 | 0.11 | +0.5 |
389,632 | + | yaiT | b4580 | 0.11 | +1.0 |
389,637 | + | yaiT | b4580 | 0.11 | +0.4 |
389,637 | + | yaiT | b4580 | 0.11 | +0.2 |
389,645 | - | yaiT | b4580 | 0.12 | +1.4 |
389,647 | + | yaiT | b4580 | 0.12 | +0.0 |
389,647 | + | yaiT | b4580 | 0.12 | -1.2 |
389,647 | + | yaiT | b4580 | 0.12 | +0.6 |
389,647 | + | yaiT | b4580 | 0.12 | -0.1 |
389,647 | + | yaiT | b4580 | 0.12 | -0.7 |
389,649 | - | yaiT | b4580 | 0.12 | +0.4 |
389,664 | - | yaiT | b4580 | 0.13 | +1.4 |
389,675 | + | yaiT | b4580 | 0.14 | +0.8 |
389,706 | + | yaiT | b4580 | 0.16 | -0.2 |
389,706 | + | yaiT | b4580 | 0.16 | -2.8 |
389,713 | + | yaiT | b4580 | 0.16 | +0.9 |
389,713 | - | yaiT | b4580 | 0.16 | +1.4 |
389,740 | + | yaiT | b4580 | 0.18 | -0.2 |
389,746 | + | yaiT | b4580 | 0.19 | -0.9 |
389,746 | + | yaiT | b4580 | 0.19 | +0.6 |
389,751 | + | yaiT | b4580 | 0.19 | +0.2 |
389,765 | + | yaiT | b4580 | 0.20 | -2.0 |
389,768 | + | yaiT | b4580 | 0.20 | -0.3 |
389,768 | + | yaiT | b4580 | 0.20 | +0.3 |
389,770 | + | yaiT | b4580 | 0.20 | +1.4 |
389,770 | + | yaiT | b4580 | 0.20 | -0.6 |
389,770 | + | yaiT | b4580 | 0.20 | +0.4 |
389,778 | - | yaiT | b4580 | 0.21 | +1.4 |
389,778 | - | yaiT | b4580 | 0.21 | +0.4 |
389,783 | + | yaiT | b4580 | 0.21 | -1.1 |
389,795 | - | yaiT | b4580 | 0.22 | +1.4 |
389,797 | + | yaiT | b4580 | 0.22 | +0.1 |
389,852 | + | yaiT | b4580 | 0.26 | -0.4 |
389,880 | + | yaiT | b4580 | 0.28 | -0.6 |
389,888 | + | yaiT | b4580 | 0.28 | -0.1 |
389,908 | + | yaiT | b4580 | 0.30 | -0.0 |
389,908 | + | yaiT | b4580 | 0.30 | -0.6 |
389,908 | + | yaiT | b4580 | 0.30 | -1.6 |
389,910 | + | yaiT | b4580 | 0.30 | -0.9 |
389,910 | + | yaiT | b4580 | 0.30 | +0.8 |
389,911 | + | yaiT | b4580 | 0.30 | +1.3 |
389,911 | + | yaiT | b4580 | 0.30 | +2.8 |
389,914 | - | yaiT | b4580 | 0.30 | +1.4 |
389,914 | - | yaiT | b4580 | 0.30 | +1.4 |
389,915 | + | yaiT | b4580 | 0.30 | -0.3 |
389,915 | + | yaiT | b4580 | 0.30 | +0.2 |
389,916 | - | yaiT | b4580 | 0.30 | +0.4 |
389,916 | - | yaiT | b4580 | 0.30 | +0.4 |
389,918 | + | yaiT | b4580 | 0.30 | -1.3 |
389,935 | + | yaiT | b4580 | 0.32 | +1.4 |
389,957 | + | yaiT | b4580 | 0.33 | -0.1 |
389,957 | + | yaiT | b4580 | 0.33 | +0.9 |
389,957 | + | yaiT | b4580 | 0.33 | +0.0 |
389,992 | + | yaiT | b4580 | 0.35 | -1.2 |
390,008 | + | yaiT | b4580 | 0.37 | +1.4 |
390,008 | + | yaiT | b4580 | 0.37 | +0.5 |
390,015 | + | yaiT | b4580 | 0.37 | -0.1 |
390,029 | + | yaiT | b4580 | 0.38 | +0.2 |
390,031 | + | yaiT | b4580 | 0.38 | -1.2 |
390,040 | + | yaiT | b4580 | 0.39 | +0.4 |
390,063 | + | yaiT | b4580 | 0.40 | -0.4 |
390,065 | + | yaiT | b4580 | 0.40 | +1.1 |
390,072 | - | yaiT | b4580 | 0.41 | +1.4 |
390,075 | + | yaiT | b4580 | 0.41 | -0.9 |
390,075 | + | yaiT | b4580 | 0.41 | +2.4 |
390,128 | - | yaiT | b4580 | 0.45 | -0.6 |
390,131 | + | yaiT | b4580 | 0.45 | +1.0 |
390,131 | + | yaiT | b4580 | 0.45 | +1.4 |
390,134 | - | yaiT | b4580 | 0.45 | +1.1 |
390,139 | - | yaiT | b4580 | 0.46 | -0.9 |
390,139 | - | yaiT | b4580 | 0.46 | +1.4 |
390,147 | - | yaiT | b4580 | 0.46 | +1.4 |
390,157 | - | yaiT | b4580 | 0.47 | +1.2 |
390,157 | - | yaiT | b4580 | 0.47 | -1.2 |
390,160 | + | yaiT | b4580 | 0.47 | -0.6 |
390,160 | + | yaiT | b4580 | 0.47 | +2.7 |
390,163 | - | yaiT | b4580 | 0.47 | +1.4 |
390,163 | - | yaiT | b4580 | 0.47 | -0.4 |
390,163 | - | yaiT | b4580 | 0.47 | +0.6 |
390,163 | - | yaiT | b4580 | 0.47 | -1.4 |
390,163 | - | yaiT | b4580 | 0.47 | -1.4 |
390,164 | - | yaiT | b4580 | 0.47 | +1.2 |
390,165 | + | yaiT | b4580 | 0.47 | -0.6 |
390,169 | + | yaiT | b4580 | 0.48 | -0.2 |
390,169 | + | yaiT | b4580 | 0.48 | +0.8 |
390,173 | - | yaiT | b4580 | 0.48 | +1.5 |
390,196 | - | yaiT | b4580 | 0.49 | -0.5 |
390,198 | + | yaiT | b4580 | 0.50 | +1.4 |
390,204 | - | yaiT | b4580 | 0.50 | -2.1 |
390,250 | - | yaiT | b4580 | 0.53 | +1.0 |
390,250 | - | yaiT | b4580 | 0.53 | +0.6 |
390,250 | - | yaiT | b4580 | 0.53 | -0.3 |
390,262 | - | yaiT | b4580 | 0.54 | +0.3 |
390,262 | - | yaiT | b4580 | 0.54 | +0.4 |
390,288 | - | yaiT | b4580 | 0.56 | -0.3 |
390,288 | - | yaiT | b4580 | 0.56 | -0.6 |
390,293 | + | yaiT | b4580 | 0.56 | -2.2 |
390,295 | - | yaiT | b4580 | 0.56 | -0.6 |
390,295 | - | yaiT | b4580 | 0.56 | +0.8 |
390,298 | + | yaiT | b4580 | 0.56 | +0.4 |
390,313 | + | yaiT | b4580 | 0.57 | +1.4 |
390,313 | + | yaiT | b4580 | 0.57 | -1.3 |
390,323 | + | yaiT | b4580 | 0.58 | -0.7 |
390,323 | + | yaiT | b4580 | 0.58 | -1.4 |
390,325 | + | yaiT | b4580 | 0.58 | -0.4 |
390,331 | - | yaiT | b4580 | 0.59 | +1.2 |
390,339 | + | yaiT | b4580 | 0.59 | -0.1 |
390,341 | - | yaiT | b4580 | 0.59 | -0.2 |
390,344 | + | yaiT | b4580 | 0.60 | +0.7 |
390,347 | - | yaiT | b4580 | 0.60 | -1.6 |
390,377 | - | yaiT | b4580 | 0.62 | -0.8 |
390,377 | - | yaiT | b4580 | 0.62 | +0.3 |
390,387 | + | yaiT | b4580 | 0.63 | -0.1 |
390,389 | + | yaiT | b4580 | 0.63 | +0.2 |
390,402 | + | yaiT | b4580 | 0.64 | +0.4 |
390,410 | - | yaiT | b4580 | 0.64 | -0.2 |
390,420 | - | yaiT | b4580 | 0.65 | -0.6 |
390,422 | - | yaiT | b4580 | 0.65 | -0.2 |
390,448 | + | yaiT | b4580 | 0.67 | +0.5 |
390,449 | + | yaiT | b4580 | 0.67 | +0.4 |
390,449 | + | yaiT | b4580 | 0.67 | +0.6 |
390,457 | - | yaiT | b4580 | 0.67 | +1.4 |
390,457 | - | yaiT | b4580 | 0.67 | -0.9 |
390,462 | + | yaiT | b4580 | 0.68 | +0.4 |
390,467 | + | yaiT | b4580 | 0.68 | +0.4 |
390,482 | + | yaiT | b4580 | 0.69 | +0.9 |
390,482 | + | yaiT | b4580 | 0.69 | -0.0 |
390,482 | + | yaiT | b4580 | 0.69 | +0.0 |
390,482 | + | yaiT | b4580 | 0.69 | -0.2 |
390,489 | + | yaiT | b4580 | 0.70 | +0.3 |
390,489 | + | yaiT | b4580 | 0.70 | -0.4 |
390,493 | + | yaiT | b4580 | 0.70 | -0.5 |
390,493 | + | yaiT | b4580 | 0.70 | +0.2 |
390,497 | - | yaiT | b4580 | 0.70 | +0.3 |
390,497 | - | yaiT | b4580 | 0.70 | +1.3 |
390,500 | - | yaiT | b4580 | 0.70 | +1.4 |
390,500 | - | yaiT | b4580 | 0.70 | -0.2 |
390,500 | - | yaiT | b4580 | 0.70 | +0.1 |
390,500 | - | yaiT | b4580 | 0.70 | -0.6 |
390,500 | - | yaiT | b4580 | 0.70 | +0.2 |
390,536 | - | yaiT | b4580 | 0.73 | +1.0 |
390,536 | - | yaiT | b4580 | 0.73 | -0.8 |
390,538 | + | yaiT | b4580 | 0.73 | +0.2 |
390,538 | + | yaiT | b4580 | 0.73 | -0.0 |
390,538 | + | yaiT | b4580 | 0.73 | +0.1 |
390,542 | + | yaiT | b4580 | 0.73 | -0.0 |
390,561 | + | yaiT | b4580 | 0.74 | +0.2 |
390,563 | + | yaiT | b4580 | 0.75 | -0.4 |
390,569 | - | yaiT | b4580 | 0.75 | +1.4 |
390,569 | - | yaiT | b4580 | 0.75 | +1.4 |
390,570 | - | yaiT | b4580 | 0.75 | -0.6 |
390,570 | - | yaiT | b4580 | 0.75 | +0.4 |
390,571 | + | yaiT | b4580 | 0.75 | -0.4 |
390,585 | + | yaiT | b4580 | 0.76 | +0.4 |
390,588 | - | yaiT | b4580 | 0.76 | +1.1 |
390,588 | - | yaiT | b4580 | 0.76 | +0.4 |
390,597 | + | yaiT | b4580 | 0.77 | +0.6 |
390,598 | - | yaiT | b4580 | 0.77 | +1.3 |
390,598 | - | yaiT | b4580 | 0.77 | -0.4 |
390,604 | - | yaiT | b4580 | 0.77 | +1.4 |
390,610 | + | yaiT | b4580 | 0.78 | -0.0 |
390,610 | + | yaiT | b4580 | 0.78 | -1.1 |
390,613 | - | yaiT | b4580 | 0.78 | +0.4 |
390,613 | - | yaiT | b4580 | 0.78 | +0.7 |
390,624 | - | yaiT | b4580 | 0.79 | -0.9 |
390,627 | - | yaiT | b4580 | 0.79 | -0.6 |
390,627 | - | yaiT | b4580 | 0.79 | +1.8 |
390,635 | - | yaiT | b4580 | 0.80 | +0.7 |
390,638 | - | yaiT | b4580 | 0.80 | +0.6 |
390,662 | + | yaiT | b4580 | 0.81 | +0.0 |
390,665 | - | yaiT | b4580 | 0.82 | -0.6 |
390,671 | + | yaiT | b4580 | 0.82 | -0.8 |
390,672 | + | yaiT | b4580 | 0.82 | +0.3 |
390,677 | - | yaiT | b4580 | 0.82 | -0.9 |
390,680 | - | yaiT | b4580 | 0.83 | -0.9 |
390,680 | - | yaiT | b4580 | 0.83 | +0.4 |
390,686 | + | yaiT | b4580 | 0.83 | +0.6 |
390,709 | + | yaiT | b4580 | 0.85 | -0.5 |
390,714 | + | yaiT | b4580 | 0.85 | -0.1 |
390,714 | + | yaiT | b4580 | 0.85 | -0.4 |
390,719 | + | yaiT | b4580 | 0.85 | -0.5 |
390,719 | + | yaiT | b4580 | 0.85 | +1.2 |
390,719 | + | yaiT | b4580 | 0.85 | -0.5 |
390,719 | + | yaiT | b4580 | 0.85 | +0.4 |
390,719 | + | yaiT | b4580 | 0.85 | +0.9 |
390,719 | + | yaiT | b4580 | 0.85 | -0.9 |
390,719 | + | yaiT | b4580 | 0.85 | +0.9 |
390,719 | + | yaiT | b4580 | 0.85 | +0.9 |
390,723 | + | yaiT | b4580 | 0.86 | +0.2 |
390,723 | + | yaiT | b4580 | 0.86 | -0.1 |
390,724 | + | yaiT | b4580 | 0.86 | +0.2 |
390,727 | - | yaiT | b4580 | 0.86 | -0.8 |
390,727 | - | yaiT | b4580 | 0.86 | +1.6 |
390,731 | - | yaiT | b4580 | 0.86 | +0.1 |
390,732 | - | yaiT | b4580 | 0.86 | +1.0 |
390,732 | - | yaiT | b4580 | 0.86 | +0.2 |
390,739 | - | yaiT | b4580 | 0.87 | -0.2 |
390,739 | - | yaiT | b4580 | 0.87 | -0.1 |
390,826 | + | +0.6 | |||
390,826 | + | -0.7 | |||
390,846 | + | -3.4 | |||
390,846 | + | +0.8 | |||
390,846 | + | +0.1 | |||
390,846 | - | +0.1 | |||
390,846 | - | -0.0 | |||
390,851 | + | +2.0 | |||
390,851 | + | +0.3 | |||
390,851 | + | -0.0 | |||
390,852 | + | -0.2 | |||
390,857 | + | +1.4 | |||
390,857 | + | -0.2 | |||
390,865 | - | -0.8 | |||
390,865 | - | -0.1 | |||
390,865 | - | +0.3 | |||
390,884 | + | -2.7 | |||
390,884 | + | -1.4 | |||
390,889 | + | +0.0 | |||
390,892 | + | -0.7 | |||
390,892 | - | +1.4 | |||
390,895 | + | -0.6 | |||
390,898 | - | -0.2 | |||
390,903 | - | +0.3 | |||
390,903 | - | -0.3 | |||
390,910 | + | -1.0 | |||
390,915 | + | -1.8 | |||
390,918 | + | +0.2 | |||
390,920 | + | -1.2 | |||
390,920 | + | +0.8 | |||
390,920 | + | +1.0 | |||
390,926 | - | +2.0 | |||
390,928 | - | -0.6 | |||
390,956 | - | +0.4 | |||
390,958 | - | -0.5 | |||
390,958 | - | +0.2 | |||
390,958 | - | +0.7 | |||
390,958 | - | -0.1 | |||
390,958 | - | -0.7 | |||
390,980 | - | +0.2 |
Or see this region's nucleotide sequence