Strain Fitness in Pseudomonas putida KT2440 around PP_0664

Experiment: Putida_ML5X with Paraburkholderia sabiae T6SS mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0662 and PP_0663 overlap by 4 nucleotidesPP_0663 and PP_0664 are separated by 198 nucleotidesPP_0664 and PP_0665 are separated by 12 nucleotides PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705 _0662 PP_0663: PP_0663 - Transcriptional regulator, AsnC family, at 771,702 to 772,139 _0663 PP_0664: PP_0664 - homoserine dehydrogenase, at 772,338 to 773,381 _0664 PP_0665: PP_0665 - putative glyceraldehyde-3-phosphate dehydrogenase, at 773,394 to 774,812 _0665 Position (kb) 772 773 774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 771.394 kb on + strand, within PP_0662at 771.395 kb on - strand, within PP_0662at 771.461 kb on + strand, within PP_0662at 771.485 kb on + strand, within PP_0662at 771.486 kb on - strand, within PP_0662at 771.863 kb on + strand, within PP_0663at 771.863 kb on + strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.924 kb on + strand, within PP_0663at 771.924 kb on + strand, within PP_0663at 771.931 kb on - strand, within PP_0663at 772.159 kb on + strandat 772.249 kb on + strandat 772.250 kb on - strandat 772.254 kb on - strandat 772.254 kb on - strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.294 kb on - strandat 772.298 kb on + strandat 772.299 kb on - strandat 772.299 kb on - strandat 772.788 kb on + strand, within PP_0664at 772.827 kb on - strand, within PP_0664at 772.862 kb on - strand, within PP_0664at 772.886 kb on + strand, within PP_0664at 772.886 kb on + strand, within PP_0664at 772.887 kb on - strand, within PP_0664at 772.892 kb on + strand, within PP_0664at 772.892 kb on + strand, within PP_0664at 772.893 kb on - strand, within PP_0664at 772.893 kb on - strand, within PP_0664at 772.893 kb on - strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.896 kb on + strand, within PP_0664at 772.897 kb on - strand, within PP_0664at 772.897 kb on - strand, within PP_0664at 772.897 kb on - strand, within PP_0664at 772.897 kb on - strand, within PP_0664at 773.008 kb on + strand, within PP_0664at 773.008 kb on + strand, within PP_0664at 773.008 kb on + strand, within PP_0664at 773.009 kb on - strand, within PP_0664at 773.009 kb on - strand, within PP_0664at 773.009 kb on - strand, within PP_0664at 773.183 kb on - strand, within PP_0664at 773.410 kb on + strandat 773.451 kb on + strandat 773.451 kb on + strandat 773.451 kb on + strandat 773.451 kb on + strandat 773.452 kb on - strandat 773.452 kb on - strandat 773.452 kb on - strandat 773.452 kb on - strandat 773.766 kb on + strand, within PP_0665at 773.766 kb on + strand, within PP_0665at 773.766 kb on + strand, within PP_0665at 773.766 kb on + strand, within PP_0665at 773.766 kb on + strand, within PP_0665at 773.766 kb on + strand, within PP_0665at 773.767 kb on - strand, within PP_0665at 773.767 kb on - strand, within PP_0665at 773.767 kb on - strand, within PP_0665at 773.767 kb on - strand, within PP_0665at 773.832 kb on - strand, within PP_0665at 773.956 kb on - strand, within PP_0665at 773.996 kb on - strand, within PP_0665at 774.253 kb on + strand, within PP_0665at 774.254 kb on - strand, within PP_0665at 774.268 kb on - strand, within PP_0665at 774.268 kb on - strand, within PP_0665

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Per-strain Table

Position Strand Gene LocusTag Fraction Putida_ML5X with Paraburkholderia sabiae T6SS mutant
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771,394 + PP_0662 0.78 +1.1
771,395 - PP_0662 0.78 -0.8
771,461 + PP_0662 0.82 +1.0
771,485 + PP_0662 0.84 +0.9
771,486 - PP_0662 0.84 -4.2
771,863 + PP_0663 0.37 -3.7
771,863 + PP_0663 0.37 +0.3
771,864 - PP_0663 0.37 -0.3
771,864 - PP_0663 0.37 -1.2
771,864 - PP_0663 0.37 +1.2
771,924 + PP_0663 0.51 -1.0
771,924 + PP_0663 0.51 +0.6
771,931 - PP_0663 0.52 +0.7
772,159 + -0.4
772,249 + -2.4
772,250 - -0.7
772,254 - -0.2
772,254 - -0.5
772,293 + -0.7
772,293 + -0.2
772,293 + +0.7
772,293 + +0.1
772,293 + -1.2
772,293 + +0.6
772,294 - -0.2
772,298 + +0.9
772,299 - -2.1
772,299 - -0.5
772,788 + PP_0664 0.43 +1.1
772,827 - PP_0664 0.47 +0.9
772,862 - PP_0664 0.50 +1.2
772,886 + PP_0664 0.52 +0.5
772,886 + PP_0664 0.52 -1.2
772,887 - PP_0664 0.53 +0.3
772,892 + PP_0664 0.53 -0.6
772,892 + PP_0664 0.53 +1.7
772,893 - PP_0664 0.53 +0.5
772,893 - PP_0664 0.53 -0.5
772,893 - PP_0664 0.53 +2.8
772,896 + PP_0664 0.53 -0.8
772,896 + PP_0664 0.53 +0.5
772,896 + PP_0664 0.53 +0.8
772,896 + PP_0664 0.53 +0.8
772,896 + PP_0664 0.53 -1.8
772,896 + PP_0664 0.53 -0.7
772,897 - PP_0664 0.54 +0.3
772,897 - PP_0664 0.54 -0.4
772,897 - PP_0664 0.54 -0.1
772,897 - PP_0664 0.54 +1.0
773,008 + PP_0664 0.64 +0.9
773,008 + PP_0664 0.64 +0.8
773,008 + PP_0664 0.64 +0.6
773,009 - PP_0664 0.64 +0.6
773,009 - PP_0664 0.64 -0.2
773,009 - PP_0664 0.64 +1.8
773,183 - PP_0664 0.81 +0.6
773,410 + +1.2
773,451 + +0.5
773,451 + +2.1
773,451 + -0.1
773,451 + +0.4
773,452 - -0.5
773,452 - -3.2
773,452 - -0.8
773,452 - -0.1
773,766 + PP_0665 0.26 +0.6
773,766 + PP_0665 0.26 -1.4
773,766 + PP_0665 0.26 -0.9
773,766 + PP_0665 0.26 -2.4
773,766 + PP_0665 0.26 -0.8
773,766 + PP_0665 0.26 +0.2
773,767 - PP_0665 0.26 -0.8
773,767 - PP_0665 0.26 -0.4
773,767 - PP_0665 0.26 +0.2
773,767 - PP_0665 0.26 -0.6
773,832 - PP_0665 0.31 +0.5
773,956 - PP_0665 0.40 +0.3
773,996 - PP_0665 0.42 +0.6
774,253 + PP_0665 0.61 -0.4
774,254 - PP_0665 0.61 +0.9
774,268 - PP_0665 0.62 +0.6
774,268 - PP_0665 0.62 +0.5

Or see this region's nucleotide sequence