Experiment: NaCl stress 85 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0298 and PP_0299 are separated by 119 nucleotides PP_0299 and PP_0300 are separated by 131 nucleotides
PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640
_0298
PP_0299: PP_0299 - conserved protein of unknown function, at 359,760 to 360,218
_0299
PP_0300: PP_0300 - putative metallopeptidase, at 360,350 to 361,936
_0300
Position (kb) 359
360
361 Strain fitness (log2 ratio) -1
0
1 at 359.145 kb on + strand, within PP_0298 at 359.281 kb on + strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.282 kb on - strand, within PP_0298 at 359.350 kb on + strand, within PP_0298 at 359.351 kb on - strand, within PP_0298 at 359.353 kb on + strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.354 kb on - strand, within PP_0298 at 359.467 kb on + strand, within PP_0298 at 359.476 kb on + strand, within PP_0298 at 359.630 kb on + strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.631 kb on - strand at 359.820 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.851 kb on + strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.852 kb on - strand, within PP_0299 at 359.951 kb on + strand, within PP_0299 at 360.034 kb on - strand, within PP_0299 at 360.040 kb on - strand, within PP_0299 at 360.060 kb on + strand, within PP_0299 at 360.126 kb on + strand, within PP_0299 at 360.147 kb on + strand, within PP_0299 at 360.191 kb on + strand at 360.192 kb on - strand at 360.192 kb on - strand at 360.290 kb on - strand at 360.290 kb on - strand at 360.293 kb on + strand at 360.330 kb on - strand at 360.387 kb on + strand at 360.430 kb on + strand at 360.458 kb on - strand at 360.574 kb on - strand, within PP_0300 at 360.616 kb on - strand, within PP_0300 at 360.691 kb on - strand, within PP_0300 at 360.721 kb on + strand, within PP_0300 at 360.722 kb on - strand, within PP_0300 at 360.732 kb on - strand at 360.732 kb on - strand, within PP_0300 at 360.753 kb on - strand, within PP_0300 at 360.927 kb on + strand, within PP_0300 at 360.928 kb on - strand, within PP_0300 at 360.982 kb on + strand, within PP_0300 at 360.983 kb on - strand, within PP_0300 at 360.983 kb on - strand, within PP_0300 at 360.994 kb on - strand, within PP_0300 at 360.994 kb on - strand, within PP_0300 at 361.001 kb on - strand, within PP_0300 at 361.034 kb on + strand, within PP_0300 at 361.060 kb on - strand, within PP_0300 at 361.076 kb on + strand, within PP_0300 at 361.077 kb on - strand, within PP_0300 at 361.104 kb on + strand, within PP_0300 at 361.105 kb on - strand, within PP_0300 at 361.178 kb on - strand, within PP_0300
Per-strain Table
Position Strand Gene LocusTag Fraction NaCl stress 85 mM remove 359,145 + PP_0298 0.55 +0.0 359,281 + PP_0298 0.67 -0.2 359,282 - PP_0298 0.68 +0.3 359,282 - PP_0298 0.68 -0.2 359,282 - PP_0298 0.68 +0.7 359,282 - PP_0298 0.68 +0.7 359,282 - PP_0298 0.68 -1.0 359,282 - PP_0298 0.68 -0.2 359,282 - PP_0298 0.68 +0.3 359,350 + PP_0298 0.74 -0.5 359,351 - PP_0298 0.74 -0.4 359,353 + PP_0298 0.74 -0.7 359,354 - PP_0298 0.74 -1.1 359,354 - PP_0298 0.74 +0.2 359,354 - PP_0298 0.74 -0.2 359,467 + PP_0298 0.84 -0.5 359,476 + PP_0298 0.85 +0.6 359,630 + -0.3 359,631 - -0.5 359,631 - +0.5 359,631 - +0.4 359,631 - +0.2 359,631 - -0.7 359,820 + PP_0299 0.13 +0.2 359,851 + PP_0299 0.20 -0.1 359,851 + PP_0299 0.20 -0.8 359,851 + PP_0299 0.20 -0.9 359,851 + PP_0299 0.20 +0.6 359,851 + PP_0299 0.20 +0.5 359,852 - PP_0299 0.20 -0.1 359,852 - PP_0299 0.20 -1.4 359,852 - PP_0299 0.20 +0.5 359,852 - PP_0299 0.20 -0.8 359,852 - PP_0299 0.20 +0.0 359,852 - PP_0299 0.20 -0.1 359,951 + PP_0299 0.42 +0.1 360,034 - PP_0299 0.60 +0.2 360,040 - PP_0299 0.61 -0.4 360,060 + PP_0299 0.65 -1.7 360,126 + PP_0299 0.80 -0.1 360,147 + PP_0299 0.84 -0.3 360,191 + -0.1 360,192 - +0.5 360,192 - -0.3 360,290 - -0.2 360,290 - +0.1 360,293 + -0.5 360,330 - -0.7 360,387 + +0.2 360,430 + +0.2 360,458 - -0.4 360,574 - PP_0300 0.14 +1.5 360,616 - PP_0300 0.17 +0.1 360,691 - PP_0300 0.21 +0.7 360,721 + PP_0300 0.23 -0.6 360,722 - PP_0300 0.23 -0.3 360,732 - -0.3 360,732 - PP_0300 0.24 -0.1 360,753 - PP_0300 0.25 +0.1 360,927 + PP_0300 0.36 -0.7 360,928 - PP_0300 0.36 +0.7 360,982 + PP_0300 0.40 +0.3 360,983 - PP_0300 0.40 +0.3 360,983 - PP_0300 0.40 +0.3 360,994 - PP_0300 0.41 +0.1 360,994 - PP_0300 0.41 +0.4 361,001 - PP_0300 0.41 +0.6 361,034 + PP_0300 0.43 -0.4 361,060 - PP_0300 0.45 -0.0 361,076 + PP_0300 0.46 -0.4 361,077 - PP_0300 0.46 +1.1 361,104 + PP_0300 0.48 -0.1 361,105 - PP_0300 0.48 +0.9 361,178 - PP_0300 0.52 -0.0
Or see this region's nucleotide sequence