Strain Fitness in Pseudomonas putida KT2440 around PP_4880

Experiment: NaCl stress 85 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4879 and PP_4880 overlap by 4 nucleotidesPP_4880 and PP_t46 are separated by 272 nucleotidesPP_t46 and PP_t47 are separated by 88 nucleotidesPP_t47 and PP_4881 are separated by 171 nucleotides PP_4879: PP_4879 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 5,545,737 to 5,546,483 _4879 PP_4880: PP_4880 - exoribonuclease R, at 5,546,480 to 5,549,053 _4880 PP_t46: PP_t46 - tRNA-Leu, at 5,549,326 to 5,549,412 _t46 PP_t47: PP_t47 - tRNA-Leu, at 5,549,501 to 5,549,587 _t47 PP_4881: PP_4881 - putative Iron ABC transporter, periplasmic iron-binding protein, at 5,549,759 to 5,550,772 _4881 Position (kb) 5546 5547 5548 5549 5550Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5545.671 kb on + strandat 5545.695 kb on - strandat 5545.802 kb on + strandat 5545.930 kb on + strand, within PP_4879at 5545.930 kb on + strand, within PP_4879at 5545.930 kb on + strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5545.931 kb on - strand, within PP_4879at 5546.000 kb on + strand, within PP_4879at 5546.268 kb on + strand, within PP_4879at 5546.455 kb on - strandat 5546.461 kb on + strandat 5546.530 kb on + strandat 5546.530 kb on + strandat 5546.531 kb on - strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.676 kb on + strandat 5546.930 kb on + strand, within PP_4880at 5546.931 kb on - strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.946 kb on + strand, within PP_4880at 5546.947 kb on - strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.949 kb on + strand, within PP_4880at 5546.950 kb on - strandat 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.950 kb on - strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.987 kb on + strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.988 kb on - strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.991 kb on + strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.992 kb on - strand, within PP_4880at 5546.996 kb on - strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.186 kb on + strand, within PP_4880at 5547.187 kb on - strand, within PP_4880at 5547.190 kb on + strand, within PP_4880at 5547.191 kb on - strand, within PP_4880at 5547.191 kb on - strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.324 kb on + strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.325 kb on - strand, within PP_4880at 5547.333 kb on + strand, within PP_4880at 5547.370 kb on - strand, within PP_4880at 5547.456 kb on + strand, within PP_4880at 5547.493 kb on + strand, within PP_4880at 5547.494 kb on - strand, within PP_4880at 5547.494 kb on - strand, within PP_4880at 5547.780 kb on + strandat 5547.780 kb on + strand, within PP_4880at 5547.780 kb on + strand, within PP_4880at 5547.781 kb on - strand, within PP_4880at 5547.880 kb on - strand, within PP_4880at 5547.880 kb on - strand, within PP_4880at 5547.915 kb on + strand, within PP_4880at 5547.915 kb on + strand, within PP_4880at 5547.916 kb on - strand, within PP_4880at 5547.916 kb on - strand, within PP_4880at 5547.916 kb on - strand, within PP_4880at 5547.925 kb on - strand, within PP_4880at 5548.114 kb on - strand, within PP_4880at 5548.140 kb on + strand, within PP_4880at 5548.140 kb on + strand, within PP_4880at 5548.141 kb on - strand, within PP_4880at 5548.141 kb on - strand, within PP_4880at 5548.141 kb on - strand, within PP_4880at 5548.192 kb on - strand, within PP_4880at 5548.392 kb on + strandat 5548.393 kb on - strand, within PP_4880at 5548.393 kb on - strand, within PP_4880at 5548.393 kb on - strand, within PP_4880at 5548.575 kb on + strand, within PP_4880at 5548.576 kb on - strand, within PP_4880at 5548.815 kb on + strandat 5548.815 kb on + strandat 5548.815 kb on + strandat 5548.833 kb on + strandat 5548.837 kb on + strandat 5548.837 kb on + strandat 5548.837 kb on + strandat 5548.837 kb on + strandat 5548.837 kb on + strandat 5548.837 kb on + strandat 5549.077 kb on + strandat 5549.077 kb on + strandat 5549.077 kb on + strandat 5549.077 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.079 kb on + strandat 5549.083 kb on + strandat 5549.150 kb on + strandat 5549.415 kb on + strandat 5549.425 kb on + strandat 5549.447 kb on + strandat 5549.447 kb on + strandat 5549.450 kb on + strandat 5549.450 kb on + strandat 5549.470 kb on + strandat 5549.492 kb on + strandat 5549.492 kb on + strandat 5549.492 kb on + strandat 5549.588 kb on + strandat 5549.601 kb on + strandat 5549.601 kb on + strandat 5549.601 kb on + strandat 5549.609 kb on + strandat 5549.635 kb on + strandat 5549.635 kb on + strandat 5549.635 kb on + strandat 5549.636 kb on - strandat 5549.636 kb on - strandat 5549.730 kb on + strandat 5549.730 kb on + strandat 5549.731 kb on - strandat 5549.731 kb on - strandat 5549.734 kb on + strandat 5549.735 kb on - strandat 5549.741 kb on - strandat 5549.752 kb on + strandat 5549.753 kb on - strandat 5549.753 kb on - strandat 5549.788 kb on + strandat 5549.867 kb on + strand, within PP_4881at 5549.867 kb on + strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strandat 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.868 kb on - strand, within PP_4881at 5549.912 kb on + strand, within PP_4881at 5549.912 kb on + strand, within PP_4881at 5549.913 kb on - strand, within PP_4881at 5549.913 kb on - strand, within PP_4881at 5550.018 kb on - strand, within PP_4881at 5550.018 kb on - strand, within PP_4881

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Per-strain Table

Position Strand Gene LocusTag Fraction NaCl stress 85 mM
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5,545,671 + -0.5
5,545,695 - +0.2
5,545,802 + -0.4
5,545,930 + PP_4879 0.26 -0.6
5,545,930 + PP_4879 0.26 -0.8
5,545,930 + PP_4879 0.26 -0.1
5,545,931 - PP_4879 0.26 -0.2
5,545,931 - PP_4879 0.26 -0.4
5,545,931 - PP_4879 0.26 -0.8
5,545,931 - PP_4879 0.26 -0.2
5,546,000 + PP_4879 0.35 -1.1
5,546,268 + PP_4879 0.71 +0.6
5,546,455 - -0.9
5,546,461 + -1.0
5,546,530 + +0.1
5,546,530 + -0.2
5,546,531 - +1.2
5,546,676 + +0.2
5,546,676 + +0.6
5,546,676 + -0.8
5,546,676 + -1.2
5,546,930 + PP_4880 0.17 -1.6
5,546,931 - PP_4880 0.18 -1.8
5,546,946 + PP_4880 0.18 +1.2
5,546,946 + PP_4880 0.18 +1.0
5,546,946 + PP_4880 0.18 -1.6
5,546,947 - PP_4880 0.18 -0.7
5,546,949 + PP_4880 0.18 +0.6
5,546,949 + PP_4880 0.18 +1.6
5,546,949 + PP_4880 0.18 +0.2
5,546,950 - +0.6
5,546,950 - PP_4880 0.18 -0.2
5,546,950 - PP_4880 0.18 -0.0
5,546,950 - PP_4880 0.18 -1.9
5,546,950 - PP_4880 0.18 +0.1
5,546,950 - PP_4880 0.18 -0.4
5,546,987 + PP_4880 0.20 -0.4
5,546,987 + PP_4880 0.20 -1.0
5,546,987 + PP_4880 0.20 +1.0
5,546,987 + PP_4880 0.20 +0.6
5,546,987 + PP_4880 0.20 +0.6
5,546,988 - PP_4880 0.20 -0.6
5,546,988 - PP_4880 0.20 -1.4
5,546,988 - PP_4880 0.20 +0.8
5,546,991 + PP_4880 0.20 -0.6
5,546,991 + PP_4880 0.20 -1.4
5,546,991 + PP_4880 0.20 -0.8
5,546,991 + PP_4880 0.20 -1.0
5,546,991 + PP_4880 0.20 -0.2
5,546,991 + PP_4880 0.20 +0.6
5,546,991 + PP_4880 0.20 +1.0
5,546,991 + PP_4880 0.20 +0.4
5,546,991 + PP_4880 0.20 -0.4
5,546,991 + PP_4880 0.20 +1.6
5,546,992 - PP_4880 0.20 +0.1
5,546,992 - PP_4880 0.20 -0.4
5,546,992 - PP_4880 0.20 -0.4
5,546,992 - PP_4880 0.20 -0.4
5,546,992 - PP_4880 0.20 -0.4
5,546,992 - PP_4880 0.20 -0.6
5,546,992 - PP_4880 0.20 -1.0
5,546,992 - PP_4880 0.20 -1.4
5,546,992 - PP_4880 0.20 +1.1
5,546,992 - PP_4880 0.20 -0.4
5,546,992 - PP_4880 0.20 -1.2
5,546,992 - PP_4880 0.20 -2.3
5,546,996 - PP_4880 0.20 -0.8
5,547,186 + PP_4880 0.27 -1.2
5,547,186 + PP_4880 0.27 -0.0
5,547,186 + PP_4880 0.27 +2.0
5,547,187 - PP_4880 0.27 -0.4
5,547,190 + PP_4880 0.28 -1.9
5,547,191 - PP_4880 0.28 +2.0
5,547,191 - PP_4880 0.28 -1.6
5,547,324 + PP_4880 0.33 +1.6
5,547,324 + PP_4880 0.33 +0.8
5,547,324 + PP_4880 0.33 -0.8
5,547,325 - PP_4880 0.33 -1.0
5,547,325 - PP_4880 0.33 -0.8
5,547,325 - PP_4880 0.33 -1.2
5,547,325 - PP_4880 0.33 -1.2
5,547,325 - PP_4880 0.33 -1.0
5,547,333 + PP_4880 0.33 -0.2
5,547,370 - PP_4880 0.35 -0.2
5,547,456 + PP_4880 0.38 +1.6
5,547,493 + PP_4880 0.39 -1.2
5,547,494 - PP_4880 0.39 -1.4
5,547,494 - PP_4880 0.39 -0.4
5,547,780 + +0.6
5,547,780 + PP_4880 0.51 +0.6
5,547,780 + PP_4880 0.51 +1.0
5,547,781 - PP_4880 0.51 -1.0
5,547,880 - PP_4880 0.54 +1.0
5,547,880 - PP_4880 0.54 -0.2
5,547,915 + PP_4880 0.56 +0.6
5,547,915 + PP_4880 0.56 +0.6
5,547,916 - PP_4880 0.56 +0.6
5,547,916 - PP_4880 0.56 +0.6
5,547,916 - PP_4880 0.56 -0.4
5,547,925 - PP_4880 0.56 -1.6
5,548,114 - PP_4880 0.63 -1.0
5,548,140 + PP_4880 0.64 -0.8
5,548,140 + PP_4880 0.64 -1.2
5,548,141 - PP_4880 0.65 +0.3
5,548,141 - PP_4880 0.65 -0.0
5,548,141 - PP_4880 0.65 +0.2
5,548,192 - PP_4880 0.67 -0.4
5,548,392 + -1.0
5,548,393 - PP_4880 0.74 -0.0
5,548,393 - PP_4880 0.74 +1.2
5,548,393 - PP_4880 0.74 -1.2
5,548,575 + PP_4880 0.81 -0.0
5,548,576 - PP_4880 0.81 -1.1
5,548,815 + -0.4
5,548,815 + -0.0
5,548,815 + +1.6
5,548,833 + +0.6
5,548,837 + -1.4
5,548,837 + -1.0
5,548,837 + +0.6
5,548,837 + -0.0
5,548,837 + +1.6
5,548,837 + -0.4
5,549,077 + +0.6
5,549,077 + +0.6
5,549,077 + +1.6
5,549,077 + -0.8
5,549,079 + -1.0
5,549,079 + -0.0
5,549,079 + +0.6
5,549,079 + -0.8
5,549,079 + -0.0
5,549,079 + +1.6
5,549,079 + +0.2
5,549,079 + -0.0
5,549,079 + -1.0
5,549,083 + -0.0
5,549,150 + -0.1
5,549,415 + +0.7
5,549,425 + +0.3
5,549,447 + -0.2
5,549,447 + -1.2
5,549,450 + -0.1
5,549,450 + +0.2
5,549,470 + +0.0
5,549,492 + -0.7
5,549,492 + +0.2
5,549,492 + -0.2
5,549,588 + +0.6
5,549,601 + -0.9
5,549,601 + +0.2
5,549,601 + -0.1
5,549,609 + +0.1
5,549,635 + +1.1
5,549,635 + +0.9
5,549,635 + -0.9
5,549,636 - -0.2
5,549,636 - +1.4
5,549,730 + -0.6
5,549,730 + +0.0
5,549,731 - -0.3
5,549,731 - -0.0
5,549,734 + +0.2
5,549,735 - -0.4
5,549,741 - -0.4
5,549,752 + -0.1
5,549,753 - +0.0
5,549,753 - +0.7
5,549,788 + -0.6
5,549,867 + PP_4881 0.11 -0.1
5,549,867 + PP_4881 0.11 -0.7
5,549,868 - PP_4881 0.11 +0.1
5,549,868 - PP_4881 0.11 -0.6
5,549,868 - +3.6
5,549,868 - PP_4881 0.11 -0.3
5,549,868 - PP_4881 0.11 +0.2
5,549,868 - PP_4881 0.11 -0.3
5,549,868 - PP_4881 0.11 +0.7
5,549,868 - PP_4881 0.11 -0.7
5,549,868 - PP_4881 0.11 +0.4
5,549,868 - PP_4881 0.11 +0.1
5,549,868 - PP_4881 0.11 -1.0
5,549,912 + PP_4881 0.15 -1.0
5,549,912 + PP_4881 0.15 +0.0
5,549,913 - PP_4881 0.15 +0.8
5,549,913 - PP_4881 0.15 -1.5
5,550,018 - PP_4881 0.26 -0.1
5,550,018 - PP_4881 0.26 +0.7

Or see this region's nucleotide sequence