Experiment: NaCl stress 25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0132 and PP_0133 overlap by 4 nucleotides PP_0133 and PP_0134 are separated by 210 nucleotides
PP_0132: PP_0132 - Alginate biosynthesis sensor protein KinB, at 138,722 to 140,503
_0132
PP_0133: PP_0133 - Alginate biosynthesis transcriptional regulatory protein AlgB, at 140,500 to 141,846
_0133
PP_0134: PP_0134 - conserved exported protein of unknown function, at 142,057 to 142,878
_0134
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 139.949 kb on - strand, within PP_0132 at 139.958 kb on + strand, within PP_0132 at 139.959 kb on - strand, within PP_0132 at 139.988 kb on + strand, within PP_0132 at 139.989 kb on - strand, within PP_0132 at 140.154 kb on + strand, within PP_0132 at 140.155 kb on - strand, within PP_0132 at 140.176 kb on - strand, within PP_0132 at 140.389 kb on + strand at 140.389 kb on + strand at 140.390 kb on - strand at 140.390 kb on - strand at 140.390 kb on - strand at 140.390 kb on - strand at 140.503 kb on + strand at 140.510 kb on + strand at 140.511 kb on - strand at 140.511 kb on - strand at 140.511 kb on - strand at 140.511 kb on - strand at 140.511 kb on - strand at 140.511 kb on - strand at 140.528 kb on + strand at 140.535 kb on + strand at 140.535 kb on + strand at 140.605 kb on - strand at 140.632 kb on - strand at 140.644 kb on + strand, within PP_0133 at 140.737 kb on + strand, within PP_0133 at 140.738 kb on - strand, within PP_0133 at 140.774 kb on + strand, within PP_0133 at 140.829 kb on - strand, within PP_0133 at 140.930 kb on + strand, within PP_0133 at 141.000 kb on + strand, within PP_0133 at 141.000 kb on + strand, within PP_0133 at 141.001 kb on - strand, within PP_0133 at 141.001 kb on - strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.004 kb on + strand, within PP_0133 at 141.005 kb on - strand, within PP_0133 at 141.005 kb on - strand, within PP_0133 at 141.005 kb on - strand, within PP_0133 at 141.005 kb on - strand, within PP_0133 at 141.005 kb on - strand, within PP_0133 at 141.045 kb on - strand, within PP_0133 at 141.045 kb on - strand, within PP_0133 at 141.119 kb on - strand, within PP_0133 at 141.199 kb on + strand, within PP_0133 at 141.200 kb on - strand, within PP_0133 at 141.200 kb on - strand, within PP_0133 at 141.396 kb on + strand, within PP_0133 at 141.396 kb on + strand, within PP_0133 at 141.397 kb on - strand, within PP_0133 at 141.427 kb on + strand, within PP_0133 at 141.428 kb on - strand, within PP_0133 at 141.530 kb on + strand, within PP_0133 at 141.530 kb on + strand, within PP_0133 at 141.559 kb on + strand, within PP_0133 at 141.559 kb on + strand, within PP_0133 at 141.560 kb on - strand, within PP_0133 at 141.622 kb on - strand, within PP_0133 at 141.682 kb on + strand, within PP_0133 at 141.682 kb on + strand, within PP_0133 at 141.682 kb on + strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.683 kb on - strand, within PP_0133 at 141.707 kb on - strand, within PP_0133 at 141.749 kb on + strand at 141.750 kb on - strand at 141.874 kb on + strand at 141.874 kb on + strand at 141.875 kb on - strand at 141.875 kb on - strand at 141.875 kb on - strand at 141.879 kb on - strand at 141.879 kb on - strand at 141.940 kb on + strand at 141.962 kb on + strand at 141.963 kb on - strand at 141.963 kb on - strand at 141.963 kb on - strand at 141.991 kb on + strand at 141.991 kb on + strand at 141.992 kb on - strand at 141.992 kb on - strand at 141.992 kb on - strand at 142.074 kb on + strand at 142.074 kb on + strand at 142.075 kb on - strand at 142.111 kb on - strand at 142.316 kb on + strand, within PP_0134 at 142.317 kb on - strand, within PP_0134 at 142.376 kb on - strand, within PP_0134 at 142.458 kb on + strand, within PP_0134 at 142.458 kb on + strand, within PP_0134 at 142.458 kb on + strand, within PP_0134 at 142.458 kb on + strand, within PP_0134 at 142.459 kb on - strand, within PP_0134 at 142.459 kb on - strand, within PP_0134 at 142.459 kb on - strand, within PP_0134 at 142.459 kb on - strand, within PP_0134 at 142.460 kb on + strand, within PP_0134 at 142.460 kb on + strand, within PP_0134 at 142.460 kb on + strand, within PP_0134 at 142.460 kb on + strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.461 kb on - strand, within PP_0134 at 142.466 kb on + strand, within PP_0134 at 142.466 kb on + strand, within PP_0134 at 142.467 kb on - strand, within PP_0134 at 142.564 kb on + strand, within PP_0134 at 142.564 kb on + strand, within PP_0134 at 142.565 kb on - strand, within PP_0134 at 142.565 kb on - strand, within PP_0134 at 142.565 kb on - strand, within PP_0134 at 142.691 kb on - strand, within PP_0134 at 142.691 kb on - strand, within PP_0134
Per-strain Table
Position Strand Gene LocusTag Fraction NaCl stress 25mM remove 139,949 - PP_0132 0.69 +0.3 139,958 + PP_0132 0.69 -0.2 139,959 - PP_0132 0.69 -0.7 139,988 + PP_0132 0.71 +0.6 139,989 - PP_0132 0.71 +0.2 140,154 + PP_0132 0.80 -0.2 140,155 - PP_0132 0.80 +0.5 140,176 - PP_0132 0.82 +0.0 140,389 + -1.7 140,389 + +0.1 140,390 - -0.4 140,390 - +0.3 140,390 - +0.1 140,390 - -0.1 140,503 + -0.5 140,510 + +0.4 140,511 - +0.1 140,511 - +0.1 140,511 - +0.7 140,511 - -0.0 140,511 - +1.0 140,511 - -0.6 140,528 + -0.1 140,535 + -1.2 140,535 + -0.4 140,605 - +0.2 140,632 - +0.5 140,644 + PP_0133 0.11 -0.2 140,737 + PP_0133 0.18 -0.0 140,738 - PP_0133 0.18 -1.1 140,774 + PP_0133 0.20 -0.4 140,829 - PP_0133 0.24 +0.2 140,930 + PP_0133 0.32 +0.5 141,000 + PP_0133 0.37 +0.3 141,000 + PP_0133 0.37 +0.7 141,001 - PP_0133 0.37 +0.4 141,001 - PP_0133 0.37 -0.9 141,004 + PP_0133 0.37 -0.6 141,004 + PP_0133 0.37 -0.1 141,004 + PP_0133 0.37 -2.4 141,004 + PP_0133 0.37 +0.2 141,004 + PP_0133 0.37 +0.3 141,004 + PP_0133 0.37 -0.7 141,005 - PP_0133 0.37 +0.0 141,005 - PP_0133 0.37 -0.2 141,005 - PP_0133 0.37 +0.8 141,005 - PP_0133 0.37 +0.3 141,005 - PP_0133 0.37 -0.6 141,045 - PP_0133 0.40 +0.4 141,045 - PP_0133 0.40 +0.1 141,119 - PP_0133 0.46 -1.1 141,199 + PP_0133 0.52 +0.1 141,200 - PP_0133 0.52 -0.6 141,200 - PP_0133 0.52 +0.6 141,396 + PP_0133 0.67 +0.3 141,396 + PP_0133 0.67 -0.0 141,397 - PP_0133 0.67 +0.0 141,427 + PP_0133 0.69 -1.0 141,428 - PP_0133 0.69 -0.0 141,530 + PP_0133 0.76 -0.4 141,530 + PP_0133 0.76 -0.2 141,559 + PP_0133 0.79 -0.0 141,559 + PP_0133 0.79 +0.1 141,560 - PP_0133 0.79 +0.0 141,622 - PP_0133 0.83 +0.6 141,682 + PP_0133 0.88 -0.1 141,682 + PP_0133 0.88 -0.3 141,682 + PP_0133 0.88 -0.9 141,683 - PP_0133 0.88 +0.2 141,683 - PP_0133 0.88 +0.2 141,683 - PP_0133 0.88 +1.5 141,683 - PP_0133 0.88 +0.8 141,683 - PP_0133 0.88 +0.5 141,683 - PP_0133 0.88 +0.1 141,683 - PP_0133 0.88 +0.5 141,707 - PP_0133 0.90 -0.7 141,749 + +0.5 141,750 - -0.1 141,874 + -0.8 141,874 + -0.4 141,875 - +0.5 141,875 - +0.4 141,875 - +0.3 141,879 - -0.9 141,879 - -1.1 141,940 + -0.9 141,962 + -1.9 141,963 - -0.3 141,963 - -0.8 141,963 - +0.3 141,991 + +0.2 141,991 + -0.4 141,992 - +0.0 141,992 - -0.5 141,992 - -0.1 142,074 + -0.4 142,074 + -0.5 142,075 - -1.0 142,111 - +0.3 142,316 + PP_0134 0.32 +0.3 142,317 - PP_0134 0.32 -0.7 142,376 - PP_0134 0.39 -0.5 142,458 + PP_0134 0.49 -1.1 142,458 + PP_0134 0.49 -0.0 142,458 + PP_0134 0.49 +0.4 142,458 + PP_0134 0.49 -0.3 142,459 - PP_0134 0.49 -0.2 142,459 - PP_0134 0.49 +0.2 142,459 - PP_0134 0.49 +0.3 142,459 - PP_0134 0.49 +1.2 142,460 + PP_0134 0.49 +0.4 142,460 + PP_0134 0.49 -0.4 142,460 + PP_0134 0.49 -0.9 142,460 + PP_0134 0.49 -0.9 142,461 - PP_0134 0.49 -0.3 142,461 - PP_0134 0.49 +0.1 142,461 - PP_0134 0.49 +0.6 142,461 - PP_0134 0.49 -0.4 142,461 - PP_0134 0.49 -0.6 142,461 - PP_0134 0.49 +0.3 142,461 - PP_0134 0.49 -0.4 142,466 + PP_0134 0.50 +0.2 142,466 + PP_0134 0.50 +0.1 142,467 - PP_0134 0.50 +0.2 142,564 + PP_0134 0.62 +0.0 142,564 + PP_0134 0.62 -0.0 142,565 - PP_0134 0.62 +0.2 142,565 - PP_0134 0.62 +0.8 142,565 - PP_0134 0.62 -0.3 142,691 - PP_0134 0.77 +0.3 142,691 - PP_0134 0.77 +0.7
Or see this region's nucleotide sequence