Strain Fitness in Pseudomonas putida KT2440 around PP_4147

Experiment: LB_noSalt 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4146 and PP_4147 overlap by 4 nucleotidesPP_4147 and PP_4148 are separated by 1 nucleotides PP_4146: PP_4146 - Peptide ABC transporter, periplamic peptide-binding protein, at 4,683,362 to 4,685,191 _4146 PP_4147: PP_4147 - microcin C transporter - periplasmic binding protein, at 4,685,188 to 4,687,023 _4147 PP_4148: PP_4148 - putative inner membrane ABC transporter permease protein, at 4,687,025 to 4,688,098 _4148 Position (kb) 4685 4686 4687 4688Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.220 kb on + strand, within PP_4146at 4684.221 kb on - strand, within PP_4146at 4684.221 kb on - strand, within PP_4146at 4684.221 kb on - strand, within PP_4146at 4684.221 kb on - strand, within PP_4146at 4684.222 kb on + strand, within PP_4146at 4684.223 kb on - strand, within PP_4146at 4684.223 kb on - strand, within PP_4146at 4684.460 kb on + strand, within PP_4146at 4684.460 kb on + strand, within PP_4146at 4684.461 kb on - strand, within PP_4146at 4684.461 kb on - strand, within PP_4146at 4684.463 kb on + strand, within PP_4146at 4684.464 kb on - strand, within PP_4146at 4684.568 kb on + strand, within PP_4146at 4684.569 kb on - strand, within PP_4146at 4684.569 kb on - strand, within PP_4146at 4684.598 kb on - strandat 4684.598 kb on - strand, within PP_4146at 4684.717 kb on - strand, within PP_4146at 4684.747 kb on + strand, within PP_4146at 4684.748 kb on + strand, within PP_4146at 4684.748 kb on + strand, within PP_4146at 4684.748 kb on + strand, within PP_4146at 4684.748 kb on + strand, within PP_4146at 4684.748 kb on + strand, within PP_4146at 4684.749 kb on - strand, within PP_4146at 4684.898 kb on + strand, within PP_4146at 4684.898 kb on + strand, within PP_4146at 4684.899 kb on - strand, within PP_4146at 4684.899 kb on - strand, within PP_4146at 4684.940 kb on + strand, within PP_4146at 4684.940 kb on + strand, within PP_4146at 4684.940 kb on + strand, within PP_4146at 4684.940 kb on + strand, within PP_4146at 4684.941 kb on - strand, within PP_4146at 4684.941 kb on - strand, within PP_4146at 4684.941 kb on - strand, within PP_4146at 4684.941 kb on - strand, within PP_4146at 4684.941 kb on - strand, within PP_4146at 4685.057 kb on + strandat 4685.057 kb on + strandat 4685.060 kb on + strandat 4685.061 kb on - strandat 4685.061 kb on - strandat 4685.061 kb on - strandat 4685.061 kb on - strandat 4685.061 kb on - strandat 4685.079 kb on - strandat 4685.138 kb on + strandat 4685.138 kb on + strandat 4685.139 kb on - strandat 4685.155 kb on + strandat 4685.156 kb on - strandat 4685.156 kb on - strandat 4685.333 kb on - strandat 4685.445 kb on + strand, within PP_4147at 4685.446 kb on - strand, within PP_4147at 4685.449 kb on + strand, within PP_4147at 4685.450 kb on - strand, within PP_4147at 4685.450 kb on - strand, within PP_4147at 4685.551 kb on + strand, within PP_4147at 4685.552 kb on - strand, within PP_4147at 4685.842 kb on + strand, within PP_4147at 4685.842 kb on + strand, within PP_4147at 4685.843 kb on - strand, within PP_4147at 4686.017 kb on - strand, within PP_4147at 4686.056 kb on - strand, within PP_4147at 4686.056 kb on - strand, within PP_4147at 4686.205 kb on + strand, within PP_4147at 4686.206 kb on - strand, within PP_4147at 4686.241 kb on + strand, within PP_4147at 4686.241 kb on + strand, within PP_4147at 4686.260 kb on - strand, within PP_4147at 4686.260 kb on - strand, within PP_4147at 4686.353 kb on + strand, within PP_4147at 4686.353 kb on + strand, within PP_4147at 4686.425 kb on - strand, within PP_4147at 4686.425 kb on - strand, within PP_4147at 4686.425 kb on - strand, within PP_4147at 4686.425 kb on - strand, within PP_4147at 4686.610 kb on + strand, within PP_4147at 4686.610 kb on + strand, within PP_4147at 4686.610 kb on + strand, within PP_4147at 4686.611 kb on - strand, within PP_4147at 4686.611 kb on - strand, within PP_4147at 4686.614 kb on + strand, within PP_4147at 4686.615 kb on - strand, within PP_4147at 4686.637 kb on + strand, within PP_4147at 4686.856 kb on + strandat 4686.856 kb on + strandat 4686.856 kb on + strandat 4686.859 kb on + strandat 4686.859 kb on + strandat 4686.859 kb on + strandat 4686.859 kb on + strandat 4686.860 kb on - strandat 4686.901 kb on + strandat 4686.940 kb on + strandat 4686.940 kb on + strandat 4686.941 kb on - strandat 4686.941 kb on - strandat 4686.981 kb on - strandat 4687.021 kb on + strandat 4687.022 kb on - strandat 4687.035 kb on - strandat 4687.274 kb on + strand, within PP_4148at 4687.274 kb on + strand, within PP_4148at 4687.274 kb on + strand, within PP_4148at 4687.275 kb on - strand, within PP_4148at 4687.275 kb on - strand, within PP_4148at 4687.326 kb on - strand, within PP_4148at 4687.326 kb on - strandat 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.439 kb on + strand, within PP_4148at 4687.440 kb on - strand, within PP_4148at 4687.440 kb on - strand, within PP_4148at 4687.530 kb on - strand, within PP_4148at 4687.589 kb on + strand, within PP_4148at 4687.667 kb on + strand, within PP_4148at 4687.667 kb on + strand, within PP_4148at 4687.668 kb on - strand, within PP_4148at 4687.668 kb on - strand, within PP_4148at 4687.772 kb on + strand, within PP_4148at 4687.772 kb on + strand, within PP_4148at 4687.773 kb on - strand, within PP_4148at 4687.773 kb on - strand, within PP_4148

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt 37C
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4,684,220 + PP_4146 0.47 +0.5
4,684,220 + PP_4146 0.47 -0.6
4,684,220 + PP_4146 0.47 +0.4
4,684,220 + PP_4146 0.47 +0.7
4,684,220 + PP_4146 0.47 +0.8
4,684,220 + PP_4146 0.47 +0.9
4,684,220 + PP_4146 0.47 -0.6
4,684,220 + PP_4146 0.47 -0.8
4,684,221 - PP_4146 0.47 -0.3
4,684,221 - PP_4146 0.47 +0.3
4,684,221 - PP_4146 0.47 +0.7
4,684,221 - PP_4146 0.47 +0.1
4,684,222 + PP_4146 0.47 -0.4
4,684,223 - PP_4146 0.47 -0.3
4,684,223 - PP_4146 0.47 -0.8
4,684,460 + PP_4146 0.60 +0.2
4,684,460 + PP_4146 0.60 -0.5
4,684,461 - PP_4146 0.60 +0.3
4,684,461 - PP_4146 0.60 +0.5
4,684,463 + PP_4146 0.60 +0.9
4,684,464 - PP_4146 0.60 -0.5
4,684,568 + PP_4146 0.66 -0.1
4,684,569 - PP_4146 0.66 -0.9
4,684,569 - PP_4146 0.66 -0.2
4,684,598 - +0.6
4,684,598 - PP_4146 0.68 -0.0
4,684,717 - PP_4146 0.74 +0.1
4,684,747 + PP_4146 0.76 +0.1
4,684,748 + PP_4146 0.76 +0.4
4,684,748 + PP_4146 0.76 -0.0
4,684,748 + PP_4146 0.76 +0.7
4,684,748 + PP_4146 0.76 -0.5
4,684,748 + PP_4146 0.76 -0.7
4,684,749 - PP_4146 0.76 -0.6
4,684,898 + PP_4146 0.84 +0.7
4,684,898 + PP_4146 0.84 +0.8
4,684,899 - PP_4146 0.84 +0.7
4,684,899 - PP_4146 0.84 +0.2
4,684,940 + PP_4146 0.86 +0.5
4,684,940 + PP_4146 0.86 +0.4
4,684,940 + PP_4146 0.86 +1.1
4,684,940 + PP_4146 0.86 -0.4
4,684,941 - PP_4146 0.86 -0.5
4,684,941 - PP_4146 0.86 +0.3
4,684,941 - PP_4146 0.86 +0.3
4,684,941 - PP_4146 0.86 -0.8
4,684,941 - PP_4146 0.86 -0.2
4,685,057 + -0.7
4,685,057 + -0.4
4,685,060 + -0.1
4,685,061 - -0.0
4,685,061 - +0.1
4,685,061 - +0.6
4,685,061 - +0.3
4,685,061 - -0.6
4,685,079 - +0.0
4,685,138 + +0.6
4,685,138 + -0.1
4,685,139 - -0.5
4,685,155 + +0.4
4,685,156 - -0.3
4,685,156 - -1.0
4,685,333 - -0.8
4,685,445 + PP_4147 0.14 -1.1
4,685,446 - PP_4147 0.14 -1.2
4,685,449 + PP_4147 0.14 +0.2
4,685,450 - PP_4147 0.14 -0.1
4,685,450 - PP_4147 0.14 +0.0
4,685,551 + PP_4147 0.20 +0.3
4,685,552 - PP_4147 0.20 -0.5
4,685,842 + PP_4147 0.36 -0.4
4,685,842 + PP_4147 0.36 -0.2
4,685,843 - PP_4147 0.36 +0.5
4,686,017 - PP_4147 0.45 +3.8
4,686,056 - PP_4147 0.47 -0.5
4,686,056 - PP_4147 0.47 -0.4
4,686,205 + PP_4147 0.55 -0.2
4,686,206 - PP_4147 0.55 +0.4
4,686,241 + PP_4147 0.57 +0.2
4,686,241 + PP_4147 0.57 +1.0
4,686,260 - PP_4147 0.58 -0.4
4,686,260 - PP_4147 0.58 -0.3
4,686,353 + PP_4147 0.63 -0.9
4,686,353 + PP_4147 0.63 +0.1
4,686,425 - PP_4147 0.67 -0.1
4,686,425 - PP_4147 0.67 -0.5
4,686,425 - PP_4147 0.67 -0.9
4,686,425 - PP_4147 0.67 +0.3
4,686,610 + PP_4147 0.77 +0.4
4,686,610 + PP_4147 0.77 -0.7
4,686,610 + PP_4147 0.77 -0.1
4,686,611 - PP_4147 0.78 -1.1
4,686,611 - PP_4147 0.78 -0.1
4,686,614 + PP_4147 0.78 -1.6
4,686,615 - PP_4147 0.78 -0.5
4,686,637 + PP_4147 0.79 -0.1
4,686,856 + -0.2
4,686,856 + +0.5
4,686,856 + +0.2
4,686,859 + -1.0
4,686,859 + -0.8
4,686,859 + -0.2
4,686,859 + -0.7
4,686,860 - -0.3
4,686,901 + -0.3
4,686,940 + +0.5
4,686,940 + -1.1
4,686,941 - -0.4
4,686,941 - -0.2
4,686,981 - -0.9
4,687,021 + -0.8
4,687,022 - -0.1
4,687,035 - -0.8
4,687,274 + PP_4148 0.23 -0.7
4,687,274 + PP_4148 0.23 +0.2
4,687,274 + PP_4148 0.23 -1.6
4,687,275 - PP_4148 0.23 -0.3
4,687,275 - PP_4148 0.23 +0.3
4,687,326 - PP_4148 0.28 -0.5
4,687,326 - +2.2
4,687,439 + PP_4148 0.39 -0.4
4,687,439 + PP_4148 0.39 +1.5
4,687,439 + PP_4148 0.39 -0.4
4,687,439 + PP_4148 0.39 -2.0
4,687,439 + PP_4148 0.39 +0.7
4,687,439 + PP_4148 0.39 +0.1
4,687,440 - PP_4148 0.39 -0.2
4,687,440 - PP_4148 0.39 +0.6
4,687,530 - PP_4148 0.47 +0.2
4,687,589 + PP_4148 0.53 -0.0
4,687,667 + PP_4148 0.60 +0.9
4,687,667 + PP_4148 0.60 +0.2
4,687,668 - PP_4148 0.60 -0.4
4,687,668 - PP_4148 0.60 -0.2
4,687,772 + PP_4148 0.70 -0.3
4,687,772 + PP_4148 0.70 +0.2
4,687,773 - PP_4148 0.70 -2.0
4,687,773 - PP_4148 0.70 -0.5

Or see this region's nucleotide sequence