Experiment: R2_N4_T2_phage10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfjN and yfjO overlap by 8 nucleotides yfjO and yfjP are separated by 354 nucleotides yfjP and yfjQ are separated by 91 nucleotides
b2630: yfjN - CP4-57 prophage; RNase LS (NCBI), at 2,763,940 to 2,765,013
yfjN
b2631: yfjO - orf, hypothetical protein (VIMSS), at 2,765,006 to 2,765,377
yfjO
b2632: yfjP - CP4-57 prophage; predicted GTP-binding protein (NCBI), at 2,765,732 to 2,766,595
yfjP
b2633: yfjQ - CP4-57 prophage; predicted protein (NCBI), at 2,766,687 to 2,767,508
yfjQ
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2764.748 kb on + strand, within yfjN at 2764.761 kb on - strand, within yfjN at 2764.908 kb on + strand at 2764.976 kb on - strand at 2765.212 kb on - strand at 2765.336 kb on - strand, within yfjO at 2765.354 kb on - strand at 2765.354 kb on - strand at 2765.411 kb on - strand at 2765.433 kb on - strand at 2765.434 kb on - strand at 2765.480 kb on + strand at 2765.536 kb on - strand at 2765.667 kb on - strand at 2765.991 kb on - strand, within yfjP at 2765.991 kb on - strand, within yfjP at 2766.049 kb on + strand, within yfjP at 2766.057 kb on - strand, within yfjP at 2766.100 kb on + strand, within yfjP at 2766.181 kb on - strand, within yfjP at 2766.201 kb on - strand, within yfjP at 2766.201 kb on - strand, within yfjP at 2766.216 kb on - strand, within yfjP at 2766.216 kb on - strand, within yfjP at 2766.395 kb on + strand, within yfjP at 2766.395 kb on + strand, within yfjP at 2766.395 kb on + strand, within yfjP at 2766.396 kb on + strand, within yfjP at 2766.396 kb on + strand, within yfjP at 2766.494 kb on - strand, within yfjP at 2766.677 kb on - strand at 2766.679 kb on + strand at 2766.679 kb on + strand at 2766.741 kb on + strand at 2766.779 kb on - strand, within yfjQ at 2766.816 kb on + strand, within yfjQ at 2766.905 kb on - strand, within yfjQ at 2767.046 kb on - strand, within yfjQ at 2767.051 kb on - strand, within yfjQ at 2767.051 kb on - strand, within yfjQ at 2767.051 kb on - strand, within yfjQ at 2767.055 kb on + strand, within yfjQ at 2767.134 kb on - strand, within yfjQ at 2767.150 kb on - strand, within yfjQ at 2767.229 kb on - strand, within yfjQ at 2767.328 kb on - strand, within yfjQ at 2767.342 kb on - strand, within yfjQ at 2767.342 kb on - strand, within yfjQ at 2767.420 kb on + strand, within yfjQ at 2767.519 kb on + strand at 2767.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2_N4_T2_phage10 remove 2,764,748 + yfjN b2630 0.75 -0.2 2,764,761 - yfjN b2630 0.76 -0.1 2,764,908 + -0.2 2,764,976 - -0.0 2,765,212 - -0.9 2,765,336 - yfjO b2631 0.89 +1.0 2,765,354 - -2.2 2,765,354 - -0.9 2,765,411 - -2.0 2,765,433 - -0.3 2,765,434 - -0.6 2,765,480 + +0.5 2,765,536 - -2.2 2,765,667 - +0.4 2,765,991 - yfjP b2632 0.30 +1.3 2,765,991 - yfjP b2632 0.30 -1.1 2,766,049 + yfjP b2632 0.37 -1.1 2,766,057 - yfjP b2632 0.38 +0.1 2,766,100 + yfjP b2632 0.43 -2.2 2,766,181 - yfjP b2632 0.52 -0.1 2,766,201 - yfjP b2632 0.54 +1.5 2,766,201 - yfjP b2632 0.54 -0.8 2,766,216 - yfjP b2632 0.56 -2.7 2,766,216 - yfjP b2632 0.56 -0.9 2,766,395 + yfjP b2632 0.77 -1.0 2,766,395 + yfjP b2632 0.77 -0.9 2,766,395 + yfjP b2632 0.77 -0.3 2,766,396 + yfjP b2632 0.77 -0.3 2,766,396 + yfjP b2632 0.77 +0.0 2,766,494 - yfjP b2632 0.88 -0.6 2,766,677 - +1.9 2,766,679 + +0.3 2,766,679 + -1.8 2,766,741 + -1.2 2,766,779 - yfjQ b2633 0.11 +1.1 2,766,816 + yfjQ b2633 0.16 -0.8 2,766,905 - yfjQ b2633 0.27 -0.5 2,767,046 - yfjQ b2633 0.44 -0.5 2,767,051 - yfjQ b2633 0.44 -0.1 2,767,051 - yfjQ b2633 0.44 -1.0 2,767,051 - yfjQ b2633 0.44 -1.1 2,767,055 + yfjQ b2633 0.45 +0.9 2,767,134 - yfjQ b2633 0.54 +0.4 2,767,150 - yfjQ b2633 0.56 -0.3 2,767,229 - yfjQ b2633 0.66 -2.9 2,767,328 - yfjQ b2633 0.78 +0.5 2,767,342 - yfjQ b2633 0.80 +0.1 2,767,342 - yfjQ b2633 0.80 +1.5 2,767,420 + yfjQ b2633 0.89 -0.4 2,767,519 + -0.0 2,767,563 + -0.9
Or see this region's nucleotide sequence