Strain Fitness in Escherichia coli BW25113 around b2495

Experiment: R2_N4_T2_phage8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfgC and yfgD are separated by 20 nucleotidesyfgD and hda are separated by 137 nucleotideshda and uraA are separated by 94 nucleotides b2494: yfgC - predicted peptidase (NCBI), at 2,614,116 to 2,615,579 yfgC b2495: yfgD - predicted oxidoreductase (NCBI), at 2,615,600 to 2,615,959 yfgD b2496: hda - ATPase regulatory factor involved in DnaA inactivation (RefSeq), at 2,616,097 to 2,616,798 hda b2497: uraA - uracil transporter (NCBI), at 2,616,893 to 2,618,182 uraA Position (kb) 2615 2616Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2614.681 kb on - strand, within yfgCat 2614.764 kb on - strand, within yfgCat 2614.889 kb on - strand, within yfgCat 2614.896 kb on + strand, within yfgCat 2615.031 kb on + strand, within yfgCat 2615.054 kb on - strand, within yfgCat 2615.057 kb on - strand, within yfgCat 2615.057 kb on - strand, within yfgCat 2615.057 kb on - strand, within yfgCat 2615.356 kb on - strand, within yfgCat 2615.392 kb on - strand, within yfgCat 2615.403 kb on - strand, within yfgCat 2615.463 kb on - strandat 2615.463 kb on - strandat 2615.470 kb on + strandat 2615.470 kb on - strandat 2615.470 kb on - strandat 2615.719 kb on - strand, within yfgDat 2615.756 kb on + strand, within yfgDat 2615.766 kb on - strand, within yfgDat 2615.766 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.857 kb on - strand, within yfgDat 2615.857 kb on - strand, within yfgDat 2615.898 kb on - strand, within yfgDat 2615.953 kb on - strandat 2615.966 kb on - strandat 2616.025 kb on + strandat 2616.867 kb on + strandat 2616.867 kb on + strandat 2616.869 kb on + strandat 2616.955 kb on - strandat 2616.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2_N4_T2_phage8
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2,614,681 - yfgC b2494 0.39 -0.8
2,614,764 - yfgC b2494 0.44 +0.9
2,614,889 - yfgC b2494 0.53 -1.0
2,614,896 + yfgC b2494 0.53 +1.5
2,615,031 + yfgC b2494 0.62 +0.5
2,615,054 - yfgC b2494 0.64 -1.8
2,615,057 - yfgC b2494 0.64 +0.7
2,615,057 - yfgC b2494 0.64 -0.3
2,615,057 - yfgC b2494 0.64 +2.3
2,615,356 - yfgC b2494 0.85 +0.2
2,615,392 - yfgC b2494 0.87 +0.6
2,615,403 - yfgC b2494 0.88 +0.5
2,615,463 - +1.6
2,615,463 - -0.7
2,615,470 + +0.7
2,615,470 - -4.3
2,615,470 - +0.0
2,615,719 - yfgD b2495 0.33 +1.6
2,615,756 + yfgD b2495 0.43 +0.4
2,615,766 - yfgD b2495 0.46 +1.3
2,615,766 - yfgD b2495 0.46 -1.2
2,615,826 - yfgD b2495 0.63 +0.1
2,615,826 - yfgD b2495 0.63 -0.4
2,615,826 - yfgD b2495 0.63 +1.2
2,615,826 - yfgD b2495 0.63 +1.5
2,615,857 - yfgD b2495 0.71 +0.3
2,615,857 - yfgD b2495 0.71 +1.4
2,615,898 - yfgD b2495 0.83 +1.3
2,615,953 - -3.0
2,615,966 - +2.1
2,616,025 + -0.5
2,616,867 + -0.6
2,616,867 + +1.0
2,616,869 + -1.3
2,616,955 - -0.5
2,616,955 - +1.3

Or see this region's nucleotide sequence