Strain Fitness in Escherichia coli BW25113 around b0807

Experiment: R2_N4_T1_phage10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfiu and ybiM are separated by 264 nucleotidesybiM and ybiN are separated by 275 nucleotidesybiN and ybiO overlap by 4 nucleotides b0805: fiu - predicted iron outer membrane transporter (NCBI), at 838,472 to 840,754 fiu b0806: ybiM - orf, hypothetical protein (VIMSS), at 841,019 to 841,279 ybiM b0807: ybiN - orf, hypothetical protein (VIMSS), at 841,555 to 842,481 ybiN b0808: ybiO - putative transport protein (VIMSS), at 842,478 to 844,703 ybiO Position (kb) 841 842 843Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 840.820 kb on + strandat 840.832 kb on - strandat 840.832 kb on - strandat 841.192 kb on + strand, within ybiMat 841.223 kb on - strand, within ybiMat 841.327 kb on + strandat 841.327 kb on + strandat 841.546 kb on - strandat 841.559 kb on - strandat 841.559 kb on - strandat 841.559 kb on - strandat 841.658 kb on + strand, within ybiNat 841.678 kb on - strand, within ybiNat 841.682 kb on + strand, within ybiNat 841.689 kb on - strand, within ybiNat 841.769 kb on - strand, within ybiNat 841.792 kb on + strand, within ybiNat 841.976 kb on + strand, within ybiNat 841.979 kb on - strand, within ybiNat 841.986 kb on + strand, within ybiNat 842.073 kb on - strand, within ybiNat 842.220 kb on - strand, within ybiNat 842.461 kb on + strandat 842.519 kb on - strandat 842.601 kb on - strandat 842.671 kb on + strandat 842.941 kb on - strand, within ybiOat 842.962 kb on - strand, within ybiOat 843.218 kb on - strand, within ybiOat 843.370 kb on - strand, within ybiO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2_N4_T1_phage10
remove
840,820 + -4.4
840,832 - -2.3
840,832 - +1.4
841,192 + ybiM b0806 0.66 +0.3
841,223 - ybiM b0806 0.78 -1.7
841,327 + -0.6
841,327 + +2.3
841,546 - +0.8
841,559 - +0.8
841,559 - +1.2
841,559 - +0.4
841,658 + ybiN b0807 0.11 +1.9
841,678 - ybiN b0807 0.13 +0.4
841,682 + ybiN b0807 0.14 -0.1
841,689 - ybiN b0807 0.14 +0.7
841,769 - ybiN b0807 0.23 +1.0
841,792 + ybiN b0807 0.26 +1.0
841,976 + ybiN b0807 0.45 +1.1
841,979 - ybiN b0807 0.46 +1.5
841,986 + ybiN b0807 0.46 +0.1
842,073 - ybiN b0807 0.56 -2.8
842,220 - ybiN b0807 0.72 +1.7
842,461 + +0.4
842,519 - +0.9
842,601 - -2.0
842,671 + -2.2
842,941 - ybiO b0808 0.21 +1.1
842,962 - ybiO b0808 0.22 -1.0
843,218 - ybiO b0808 0.33 +0.8
843,370 - ybiO b0808 0.40 -3.5

Or see this region's nucleotide sequence