Experiment: R1_N4_T1_phage0
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b0878 and macB overlap by 4 nucleotides macB and cspD are separated by 72 nucleotides cspD and clpS are separated by 322 nucleotides clpS and clpA are separated by 30 nucleotides
b0878: b0878 - putative membrane protein (VIMSS), at 918,458 to 919,573
b0878
b0879: macB - fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI), at 919,570 to 921,516
macB
b0880: cspD - cold shock protein homolog (NCBI), at 921,589 to 921,813
cspD
b0881: clpS - ATP-dependent Clp protease adaptor protein ClpS (NCBI), at 922,136 to 922,456
clpS
b0882: clpA - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI), at 922,487 to 924,763
clpA
Position (kb) 919
920
921
922 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 918.620 kb on + strand, within b0878 at 918.789 kb on - strand, within b0878 at 918.849 kb on - strand at 918.849 kb on - strand, within b0878 at 918.985 kb on + strand, within b0878 at 919.227 kb on - strand, within b0878 at 919.262 kb on + strand, within b0878 at 919.262 kb on + strand, within b0878 at 919.298 kb on - strand, within b0878 at 919.298 kb on - strand, within b0878 at 919.343 kb on + strand, within b0878 at 919.557 kb on - strand at 919.636 kb on + strand at 919.765 kb on + strand, within macB at 919.979 kb on + strand, within macB at 919.979 kb on + strand, within macB at 919.994 kb on - strand, within macB at 919.994 kb on - strand, within macB at 920.012 kb on + strand at 920.023 kb on + strand, within macB at 920.068 kb on - strand, within macB at 920.199 kb on - strand, within macB at 920.267 kb on + strand, within macB at 920.415 kb on - strand, within macB at 920.443 kb on + strand, within macB at 920.458 kb on - strand, within macB at 920.459 kb on + strand, within macB at 920.459 kb on + strand, within macB at 920.712 kb on - strand, within macB at 920.767 kb on - strand, within macB at 920.849 kb on + strand, within macB at 920.979 kb on + strand, within macB at 921.004 kb on + strand, within macB at 921.164 kb on + strand, within macB at 921.169 kb on + strand, within macB at 921.254 kb on - strand, within macB at 921.254 kb on - strand, within macB at 921.271 kb on + strand, within macB at 921.298 kb on + strand, within macB at 921.298 kb on + strand, within macB at 921.790 kb on + strand, within cspD at 921.790 kb on + strand, within cspD at 921.956 kb on - strand at 921.956 kb on - strand at 922.042 kb on + strand at 922.042 kb on + strand at 922.055 kb on + strand at 922.069 kb on + strand at 922.091 kb on - strand at 922.103 kb on + strand at 922.124 kb on + strand at 922.246 kb on - strand, within clpS at 922.417 kb on + strand, within clpS at 922.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R1_N4_T1_phage0 remove 918,620 + b0878 b0878 0.15 +1.3 918,789 - b0878 b0878 0.30 -3.7 918,849 - +1.0 918,849 - b0878 b0878 0.35 -3.2 918,985 + b0878 b0878 0.47 -1.6 919,227 - b0878 b0878 0.69 -4.1 919,262 + b0878 b0878 0.72 -0.1 919,262 + b0878 b0878 0.72 +0.9 919,298 - b0878 b0878 0.75 -0.2 919,298 - b0878 b0878 0.75 +0.6 919,343 + b0878 b0878 0.79 -4.7 919,557 - -3.5 919,636 + +0.5 919,765 + macB b0879 0.10 +0.3 919,979 + macB b0879 0.21 -0.4 919,979 + macB b0879 0.21 +0.7 919,994 - macB b0879 0.22 -0.6 919,994 - macB b0879 0.22 +1.3 920,012 + -2.3 920,023 + macB b0879 0.23 -0.4 920,068 - macB b0879 0.26 -0.0 920,199 - macB b0879 0.32 +0.6 920,267 + macB b0879 0.36 -0.9 920,415 - macB b0879 0.43 +3.3 920,443 + macB b0879 0.45 -4.3 920,458 - macB b0879 0.46 +0.8 920,459 + macB b0879 0.46 +0.6 920,459 + macB b0879 0.46 +1.3 920,712 - macB b0879 0.59 +1.4 920,767 - macB b0879 0.61 -0.6 920,849 + macB b0879 0.66 -0.7 920,979 + macB b0879 0.72 +0.6 921,004 + macB b0879 0.74 -1.1 921,164 + macB b0879 0.82 +0.7 921,169 + macB b0879 0.82 +0.3 921,254 - macB b0879 0.86 +2.2 921,254 - macB b0879 0.86 +1.0 921,271 + macB b0879 0.87 -0.6 921,298 + macB b0879 0.89 -4.4 921,298 + macB b0879 0.89 +1.7 921,790 + cspD b0880 0.89 -0.6 921,790 + cspD b0880 0.89 -1.1 921,956 - -0.4 921,956 - -0.7 922,042 + +1.0 922,042 + -1.3 922,055 + -0.3 922,069 + -0.0 922,091 - -1.6 922,103 + -0.0 922,124 + -0.5 922,246 - clpS b0881 0.34 +0.5 922,417 + clpS b0881 0.88 +0.8 922,435 - -1.8
Or see this region's nucleotide sequence