Strain Fitness in Escherichia coli BW25113 around b4157

Experiment: LB + carbenicillin regrowth after 48hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin regrowth after 48hr
4,382,444	-	yjeM	b4156	0.39	-0.5
4,382,458	+	yjeM	b4156	0.40	+0.4
4,382,464	+	yjeM	b4156	0.40	-0.1
4,382,466	-	yjeM	b4156	0.40	-1.2
4,382,467	+	yjeM	b4156	0.40	-0.2
4,382,467	-	yjeM	b4156	0.40	+0.6
4,382,467	-	yjeM	b4156	0.40	-0.1
4,382,469	-	yjeM	b4156	0.40	+0.2
4,382,471	-	yjeM	b4156	0.41	-1.2
4,382,476	-	yjeM	b4156	0.41	+0.0
4,382,476	-	yjeM	b4156	0.41	+0.5
4,382,478	+	yjeM	b4156	0.41	-0.1
4,382,481	-	yjeM	b4156	0.41	+0.4
4,382,485	-	yjeM	b4156	0.41	-0.3
4,382,486	-	yjeM	b4156	0.42	+0.4
4,382,486	-	yjeM	b4156	0.42	+0.4
4,382,488	+	yjeM	b4156	0.42	+0.2
4,382,490	-	yjeM	b4156	0.42	-1.0
4,382,490	-	yjeM	b4156	0.42	-0.6
4,382,490	-	yjeM	b4156	0.42	+2.0
4,382,490	-	yjeM	b4156	0.42	-1.8
4,382,494	-	yjeM	b4156	0.42	+0.5
4,382,501	-	yjeM	b4156	0.43	+1.6
4,382,522	+	yjeM	b4156	0.44	+1.0
4,382,526	+	yjeM	b4156	0.44	-0.5
4,382,526	+	yjeM	b4156	0.44	-0.1
4,382,534	-	yjeM	b4156	0.45	-0.2
4,382,534	-	yjeM	b4156	0.45	-1.0
4,382,536	+	yjeM	b4156	0.45	-0.0
4,382,537	+	yjeM	b4156	0.45	-0.4
4,382,537	+	yjeM	b4156	0.45	-0.1
4,382,537	+	yjeM	b4156	0.45	-1.1
4,382,537	+	yjeM	b4156	0.45	-0.4
4,382,538	+	yjeM	b4156	0.45	-0.2
4,382,542	+	yjeM	b4156	0.45	-0.1
4,382,543	+	yjeM	b4156	0.45	-0.6
4,382,545	-	yjeM	b4156	0.45	-0.5
4,382,545	-	yjeM	b4156	0.45	+0.0
4,382,545	-	yjeM	b4156	0.45	-1.2
4,382,545	-	yjeM	b4156	0.45	+0.5
4,382,546	-	yjeM	b4156	0.46	-1.0
4,382,546	-	yjeM	b4156	0.46	+1.0
4,382,546	-	yjeM	b4156	0.46	+0.1
4,382,546	-	yjeM	b4156	0.46	+0.2
4,382,546	-	yjeM	b4156	0.46	-0.5
4,382,546	-	yjeM	b4156	0.46	-0.8
4,382,594	+	yjeM	b4156	0.49	+0.3
4,382,639	+	yjeM	b4156	0.52	-1.0
4,382,647	-	yjeM	b4156	0.52	+0.3
4,382,658	-	yjeM	b4156	0.53	+0.3
4,382,661	+	yjeM	b4156	0.53	+0.3
4,382,661	+	yjeM	b4156	0.53	+0.0
4,382,668	-	yjeM	b4156	0.54	+0.0
4,382,668	-	yjeM	b4156	0.54	-2.2
4,382,671	+	yjeM	b4156	0.54	+0.8
4,382,671	+	yjeM	b4156	0.54	+0.5
4,382,671	+	yjeM	b4156	0.54	+0.1
4,382,672	+	yjeM	b4156	0.54	+0.4
4,382,672	+	yjeM	b4156	0.54	-0.2
4,382,672	+	yjeM	b4156	0.54	-0.7
4,382,672	+	yjeM	b4156	0.54	-0.2
4,382,679	-	yjeM	b4156	0.54	-0.2
4,382,679	-	yjeM	b4156	0.54	+0.1
4,382,680	-	yjeM	b4156	0.54	+0.1
4,382,680	-	yjeM	b4156	0.54	+1.1
4,382,680	-	yjeM	b4156	0.54	-0.1
4,382,680	-	yjeM	b4156	0.54	+0.1
4,382,688	+	yjeM	b4156	0.55	+0.1
4,382,711	-	yjeM	b4156	0.56	+0.2
4,382,711	-	yjeM	b4156	0.56	+0.0
4,382,720	-	yjeM	b4156	0.57	+1.2
4,382,727	+	yjeM	b4156	0.58	-0.4
4,382,727	+	yjeM	b4156	0.58	-0.7
4,382,727	+	yjeM	b4156	0.58	+0.1
4,382,727	+	yjeM	b4156	0.58	+0.3
4,382,728	+	yjeM	b4156	0.58	-0.3
4,382,733	+	yjeM	b4156	0.58	+0.0
4,382,733	+	yjeM	b4156	0.58	+0.4
4,382,735	-	yjeM	b4156	0.58	-0.6
4,382,735	-	yjeM	b4156	0.58	+0.4
4,382,735	-	yjeM	b4156	0.58	+0.4
4,382,735	-	yjeM	b4156	0.58	+0.3
4,382,736	-	yjeM	b4156	0.58	+0.3
4,382,736	-	yjeM	b4156	0.58	+0.3
4,382,738	+	yjeM	b4156	0.58	-0.0
4,382,738	+	yjeM	b4156	0.58	-0.3
4,382,741	-	yjeM	b4156	0.58	-1.3
4,382,741	-	yjeM	b4156	0.58	+0.3
4,382,743	+	yjeM	b4156	0.59	-0.0
4,382,746	-	yjeM	b4156	0.59	-0.2
4,382,746	-	yjeM	b4156	0.59	+0.1
4,382,746	-	yjeM	b4156	0.59	+0.2
4,382,746	-	yjeM	b4156	0.59	-0.5
4,382,746	-	yjeM	b4156	0.59	+0.1
4,382,746	-	yjeM	b4156	0.59	-0.6
4,382,746	-	yjeM	b4156	0.59	+0.0
4,382,746	-	yjeM	b4156	0.59	-0.7
4,382,746	-	yjeM	b4156	0.59	-0.4
4,382,746	-	yjeM	b4156	0.59	-0.0
4,382,746	-	yjeM	b4156	0.59	+0.7
4,382,747	-	yjeM	b4156	0.59	-0.1
4,382,748	-	yjeM	b4156	0.59	-0.1
4,382,750	+	yjeM	b4156	0.59	+0.0
4,382,750	+	yjeM	b4156	0.59	+0.3
4,382,751	-	yjeM	b4156	0.59	+0.1
4,382,751	-	yjeM	b4156	0.59	+0.0
4,382,751	-	yjeM	b4156	0.59	+1.0
4,382,751	-	yjeM	b4156	0.59	-0.1
4,382,753	-	yjeM	b4156	0.59	-0.1
4,382,756	-	yjeM	b4156	0.59	+0.7
4,382,756	-	yjeM	b4156	0.59	+1.0
4,382,782	-	yjeM	b4156	0.61	+0.7
4,382,782	-	yjeM	b4156	0.61	+0.3
4,382,788	+	yjeM	b4156	0.62	+0.1
4,382,788	+	yjeM	b4156	0.62	-0.3
4,382,794	-	yjeM	b4156	0.62	+0.3
4,382,795	-	yjeM	b4156	0.62	+0.1
4,382,802	-	yjeM	b4156	0.63	+0.1
4,382,827	+	yjeM	b4156	0.64	+0.1
4,382,827	+	yjeM	b4156	0.64	-0.2
4,382,827	+	yjeM	b4156	0.64	+0.0
4,382,835	-	yjeM	b4156	0.65	-0.5
4,382,835	-	yjeM	b4156	0.65	-0.2
4,382,835	-	yjeM	b4156	0.65	-0.5
4,382,835	-	yjeM	b4156	0.65	-0.8
4,382,842	-	yjeM	b4156	0.65	-0.3
4,382,842	-	yjeM	b4156	0.65	+0.0
4,382,871	+	yjeM	b4156	0.67	-0.7
4,382,887	-	yjeM	b4156	0.68	+0.3
4,382,973	-	yjeM	b4156	0.74	+0.4
4,383,015	-	yjeM	b4156	0.77	-0.3
4,383,058	+	yjeM	b4156	0.80	-0.3
4,383,058	+	yjeM	b4156	0.80	+0.0
4,383,123	+	yjeM	b4156	0.84	-0.2
4,383,123	+	yjeM	b4156	0.84	+0.0
4,383,166	+	yjeM	b4156	0.87	-0.2
4,383,219	+				-0.2
4,383,226	+				+0.0
4,383,330	-				+0.2
4,383,377	+				+0.0
4,383,377	+				+0.3
4,383,384	-				+0.0
4,383,403	-				+0.0
4,383,403	-				+0.1
4,383,403	-				+0.6
4,383,423	+				+0.6
4,383,502	+	yjeN	b4157	0.27	+0.6
4,383,502	+	yjeN	b4157	0.27	-0.1
4,383,503	-	yjeN	b4157	0.28	+3.4
4,383,567	-	yjeN	b4157	0.48	+1.0
4,383,570	+	yjeN	b4157	0.49	+0.4
4,383,582	+	yjeN	b4157	0.53	+0.0
4,383,622	+	yjeN	b4157	0.65	+0.2
4,383,635	-	yjeN	b4157	0.70	+0.3
4,383,727	-				+0.2
4,383,731	-				+0.9
4,383,731	-				+0.2
4,383,748	-				+0.3
4,383,853	+	yjeO	b4158	0.40	+0.2
4,383,853	+	yjeO	b4158	0.40	+0.5
4,383,858	+	yjeO	b4158	0.42	-0.5
4,383,913	+	yjeO	b4158	0.59	+0.3
4,384,045	+				-0.4
4,384,140	-				+0.1
4,384,151	+				+0.0
4,384,197	-				-1.3
4,384,197	-				-0.7
4,384,221	+				-0.0
4,384,251	-				-0.0
4,384,251	-				+0.4
4,384,257	-				-0.0
4,384,257	-				+0.1
4,384,268	-				+0.7
4,384,339	-				+0.2
4,384,364	-				-0.4
4,384,403	+	yjeP	b4159	0.10	+0.3
4,384,403	+	yjeP	b4159	0.10	-0.1
4,384,412	+	yjeP	b4159	0.10	-0.1
4,384,412	+	yjeP	b4159	0.10	+0.6
4,384,412	+	yjeP	b4159	0.10	+1.0
4,384,412	+	yjeP	b4159	0.10	+0.9
4,384,412	+	yjeP	b4159	0.10	+0.3
4,384,426	-	yjeP	b4159	0.11	-0.3
4,384,434	+	yjeP	b4159	0.11	+0.5
4,384,434	+	yjeP	b4159	0.11	-0.6
4,384,513	+	yjeP	b4159	0.13	+0.5
4,384,553	+	yjeP	b4159	0.15	+0.2
4,384,553	+	yjeP	b4159	0.15	-0.0
4,384,609	+	yjeP	b4159	0.16	-0.1
4,384,609	+	yjeP	b4159	0.16	+0.3
4,384,651	+	yjeP	b4159	0.17	+0.5
4,384,671	-	yjeP	b4159	0.18	+0.3
4,384,689	-	yjeP	b4159	0.19	+0.3
4,384,710	+	yjeP	b4159	0.19	+0.1
4,384,714	-	yjeP	b4159	0.19	-0.2
4,384,714	-	yjeP	b4159	0.19	+0.4
4,384,718	-	yjeP	b4159	0.19	+0.4
4,384,718	-	yjeP	b4159	0.19	-0.0