Strain Fitness in Escherichia coli BW25113 around b1902

Experiment: LB + carbenicillin regrowth after 48hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaraF and yecI are separated by 796 nucleotidesyecI and b1903 are separated by 78 nucleotidesb1903 and azuC are separated by 114 nucleotidesazuC and yecR are separated by 262 nucleotides b1901: araF - L-arabinose transporter subunit (NCBI), at 1,983,163 to 1,984,152 araF b1902: yecI - predicted ferritin-like protein (NCBI), at 1,984,949 to 1,985,452 yecI b4537: b1903 - orf, hypothetical protein (VIMSS), at 1,985,531 to 1,985,782 b1903 b4663: azuC - expressed protein (RefSeq), at 1,985,897 to 1,985,983 azuC b1904: yecR - hypothetical protein (NCBI), at 1,986,246 to 1,986,569 yecR Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -2 -1 0 1 2at 1984.117 kb on + strandat 1984.167 kb on - strandat 1984.167 kb on - strandat 1984.167 kb on - strandat 1984.167 kb on - strandat 1984.167 kb on - strandat 1984.180 kb on + strandat 1984.300 kb on + strandat 1984.305 kb on - strandat 1984.313 kb on - strandat 1984.604 kb on + strandat 1984.838 kb on - strandat 1984.851 kb on + strandat 1984.917 kb on - strandat 1984.917 kb on - strandat 1984.925 kb on - strandat 1984.938 kb on - strandat 1984.938 kb on - strandat 1984.938 kb on - strandat 1984.964 kb on + strandat 1985.012 kb on + strand, within yecIat 1985.015 kb on - strand, within yecIat 1985.015 kb on - strand, within yecIat 1985.019 kb on + strand, within yecIat 1985.056 kb on + strand, within yecIat 1985.059 kb on + strand, within yecIat 1985.059 kb on + strand, within yecIat 1985.092 kb on + strand, within yecIat 1985.100 kb on - strand, within yecIat 1985.263 kb on - strand, within yecIat 1985.263 kb on - strand, within yecIat 1985.330 kb on + strand, within yecIat 1985.369 kb on - strand, within yecIat 1985.369 kb on - strand, within yecIat 1985.410 kb on - strandat 1985.410 kb on - strandat 1985.428 kb on - strandat 1985.449 kb on + strandat 1985.449 kb on + strandat 1985.463 kb on + strandat 1985.821 kb on - strandat 1985.843 kb on + strandat 1985.843 kb on + strandat 1985.843 kb on + strandat 1985.935 kb on + strand, within azuCat 1986.136 kb on - strandat 1986.150 kb on - strandat 1986.175 kb on - strandat 1986.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin regrowth after 48hr
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1,984,117 + -0.0
1,984,167 - -0.4
1,984,167 - +0.4
1,984,167 - +0.8
1,984,167 - -0.2
1,984,167 - -0.3
1,984,180 + +0.0
1,984,300 + -0.2
1,984,305 - +0.4
1,984,313 - +0.4
1,984,604 + -0.6
1,984,838 - +0.8
1,984,851 + -0.1
1,984,917 - +0.3
1,984,917 - +0.7
1,984,925 - +0.6
1,984,938 - +0.8
1,984,938 - +0.1
1,984,938 - +0.9
1,984,964 + -1.9
1,985,012 + yecI b1902 0.12 +0.8
1,985,015 - yecI b1902 0.13 +0.8
1,985,015 - yecI b1902 0.13 +1.8
1,985,019 + yecI b1902 0.14 +0.4
1,985,056 + yecI b1902 0.21 -0.1
1,985,059 + yecI b1902 0.22 +0.6
1,985,059 + yecI b1902 0.22 +0.7
1,985,092 + yecI b1902 0.28 -0.1
1,985,100 - yecI b1902 0.30 +0.4
1,985,263 - yecI b1902 0.62 +1.6
1,985,263 - yecI b1902 0.62 +0.1
1,985,330 + yecI b1902 0.76 +0.2
1,985,369 - yecI b1902 0.83 +0.2
1,985,369 - yecI b1902 0.83 +0.4
1,985,410 - +0.3
1,985,410 - +0.6
1,985,428 - -0.1
1,985,449 + -0.1
1,985,449 + -0.0
1,985,463 + +0.4
1,985,821 - +0.9
1,985,843 + -0.0
1,985,843 + +0.2
1,985,843 + -0.3
1,985,935 + azuC b4663 0.44 -0.7
1,986,136 - -0.2
1,986,150 - +0.2
1,986,175 - -0.5
1,986,232 - +0.5

Or see this region's nucleotide sequence