Strain Fitness in Escherichia coli BW25113 around b4367
Experiment: LB + ciprofloxacin Time9hr
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB + ciprofloxacin Time9hr |
---|---|---|---|---|---|
remove | |||||
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.2 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.7 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.2 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.6 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.8 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.5 |
4,601,902 | + | yjjQ | b4365 | 0.55 | +0.8 |
4,601,905 | - | yjjQ | b4365 | 0.56 | +0.5 |
4,601,905 | - | yjjQ | b4365 | 0.56 | +1.3 |
4,601,912 | + | yjjQ | b4365 | 0.57 | +0.1 |
4,601,921 | + | yjjQ | b4365 | 0.58 | +0.3 |
4,601,954 | - | yjjQ | b4365 | 0.63 | -0.6 |
4,601,973 | + | yjjQ | b4365 | 0.65 | +0.4 |
4,601,978 | + | yjjQ | b4365 | 0.66 | +1.2 |
4,601,978 | + | yjjQ | b4365 | 0.66 | +0.5 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.3 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.4 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.3 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.5 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.3 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.2 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.3 |
4,601,980 | + | yjjQ | b4365 | 0.66 | +0.7 |
4,601,988 | + | yjjQ | b4365 | 0.67 | +0.3 |
4,601,991 | + | yjjQ | b4365 | 0.68 | +0.2 |
4,601,994 | + | yjjQ | b4365 | 0.68 | +0.4 |
4,601,994 | + | yjjQ | b4365 | 0.68 | +0.6 |
4,601,994 | + | yjjQ | b4365 | 0.68 | +0.4 |
4,601,997 | - | yjjQ | b4365 | 0.68 | +0.8 |
4,602,003 | - | yjjQ | b4365 | 0.69 | +0.4 |
4,602,004 | - | yjjQ | b4365 | 0.69 | -0.8 |
4,602,007 | + | yjjQ | b4365 | 0.70 | +0.1 |
4,602,012 | + | yjjQ | b4365 | 0.71 | +0.7 |
4,602,012 | + | yjjQ | b4365 | 0.71 | +0.1 |
4,602,012 | + | yjjQ | b4365 | 0.71 | +0.8 |
4,602,012 | + | yjjQ | b4365 | 0.71 | -0.3 |
4,602,012 | + | yjjQ | b4365 | 0.71 | +0.3 |
4,602,023 | + | yjjQ | b4365 | 0.72 | +0.5 |
4,602,084 | - | yjjQ | b4365 | 0.80 | +0.4 |
4,602,087 | + | yjjQ | b4365 | 0.81 | +0.3 |
4,602,110 | + | yjjQ | b4365 | 0.84 | +0.0 |
4,602,114 | - | yjjQ | b4365 | 0.85 | +1.3 |
4,602,114 | - | yjjQ | b4365 | 0.85 | -0.6 |
4,602,116 | - | yjjQ | b4365 | 0.85 | +0.1 |
4,602,120 | + | yjjQ | b4365 | 0.85 | +0.5 |
4,602,128 | - | yjjQ | b4365 | 0.87 | +0.5 |
4,602,128 | - | yjjQ | b4365 | 0.87 | -0.2 |
4,602,128 | - | yjjQ | b4365 | 0.87 | +0.6 |
4,602,135 | + | yjjQ | b4365 | 0.87 | +0.5 |
4,602,135 | + | yjjQ | b4365 | 0.87 | +0.2 |
4,602,135 | + | yjjQ | b4365 | 0.87 | +0.6 |
4,602,137 | + | yjjQ | b4365 | 0.88 | +0.2 |
4,602,137 | + | yjjQ | b4365 | 0.88 | +0.1 |
4,602,137 | + | yjjQ | b4365 | 0.88 | +0.4 |
4,602,137 | - | yjjQ | b4365 | 0.88 | -0.1 |
4,602,143 | - | yjjQ | b4365 | 0.89 | +0.9 |
4,602,143 | - | yjjQ | b4365 | 0.89 | +0.2 |
4,602,143 | - | yjjQ | b4365 | 0.89 | +0.6 |
4,602,145 | - | yjjQ | b4365 | 0.89 | +0.3 |
4,602,145 | - | yjjQ | b4365 | 0.89 | -0.1 |
4,602,145 | - | yjjQ | b4365 | 0.89 | +0.2 |
4,602,145 | - | yjjQ | b4365 | 0.89 | +0.2 |
4,602,163 | + | +1.8 | |||
4,602,163 | + | +0.6 | |||
4,602,163 | + | +0.4 | |||
4,602,163 | + | +0.5 | |||
4,602,163 | + | +0.3 | |||
4,602,163 | + | +0.6 | |||
4,602,165 | + | +0.0 | |||
4,602,170 | - | +0.5 | |||
4,602,170 | - | +1.0 | |||
4,602,170 | - | +0.2 | |||
4,602,171 | - | -0.0 | |||
4,602,171 | - | +0.5 | |||
4,602,171 | - | +0.3 | |||
4,602,175 | + | +0.2 | |||
4,602,186 | + | +0.0 | |||
4,602,189 | - | +0.1 | |||
4,602,189 | - | +0.7 | |||
4,602,191 | + | -0.3 | |||
4,602,211 | + | +0.7 | |||
4,602,219 | + | +0.0 | |||
4,602,244 | + | +0.6 | |||
4,602,247 | - | -0.5 | |||
4,602,250 | - | +0.5 | |||
4,602,250 | - | +0.3 | |||
4,602,272 | + | bglJ | b4366 | 0.13 | +0.5 |
4,602,272 | + | bglJ | b4366 | 0.13 | +0.5 |
4,602,284 | + | bglJ | b4366 | 0.15 | -0.8 |
4,602,284 | + | bglJ | b4366 | 0.15 | +1.4 |
4,602,286 | + | bglJ | b4366 | 0.15 | +1.4 |
4,602,292 | - | bglJ | b4366 | 0.16 | -0.5 |
4,602,292 | - | bglJ | b4366 | 0.16 | -0.8 |
4,602,293 | + | bglJ | b4366 | 0.16 | +0.1 |
4,602,294 | + | bglJ | b4366 | 0.16 | +0.1 |
4,602,294 | + | bglJ | b4366 | 0.16 | +0.6 |
4,602,294 | - | bglJ | b4366 | 0.16 | +0.8 |
4,602,294 | - | bglJ | b4366 | 0.16 | +0.1 |
4,602,294 | - | bglJ | b4366 | 0.16 | +0.2 |
4,602,294 | - | bglJ | b4366 | 0.16 | -0.5 |
4,602,299 | + | bglJ | b4366 | 0.17 | +1.2 |
4,602,299 | + | bglJ | b4366 | 0.17 | +1.3 |
4,602,299 | + | bglJ | b4366 | 0.17 | +1.6 |
4,602,299 | + | bglJ | b4366 | 0.17 | +0.5 |
4,602,299 | + | bglJ | b4366 | 0.17 | -0.3 |
4,602,300 | + | bglJ | b4366 | 0.17 | +1.0 |
4,602,300 | + | bglJ | b4366 | 0.17 | -1.5 |
4,602,301 | + | bglJ | b4366 | 0.17 | -1.9 |
4,602,301 | - | bglJ | b4366 | 0.17 | +0.3 |
4,602,307 | - | bglJ | b4366 | 0.18 | +0.3 |
4,602,307 | - | bglJ | b4366 | 0.18 | +0.2 |
4,602,307 | - | bglJ | b4366 | 0.18 | +0.2 |
4,602,308 | - | bglJ | b4366 | 0.18 | +1.1 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.3 |
4,602,308 | - | bglJ | b4366 | 0.18 | -0.3 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.6 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.6 |
4,602,308 | - | bglJ | b4366 | 0.18 | +1.2 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.2 |
4,602,308 | - | bglJ | b4366 | 0.18 | +1.5 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.2 |
4,602,308 | - | bglJ | b4366 | 0.18 | +0.1 |
4,602,308 | - | bglJ | b4366 | 0.18 | -0.3 |
4,602,310 | - | bglJ | b4366 | 0.19 | +0.6 |
4,602,331 | + | bglJ | b4366 | 0.22 | +0.4 |
4,602,354 | - | bglJ | b4366 | 0.25 | +0.2 |
4,602,362 | - | bglJ | b4366 | 0.26 | +0.1 |
4,602,362 | - | bglJ | b4366 | 0.26 | +0.4 |
4,602,377 | + | bglJ | b4366 | 0.29 | +0.0 |
4,602,384 | + | bglJ | b4366 | 0.30 | +0.8 |
4,602,384 | + | bglJ | b4366 | 0.30 | +1.3 |
4,602,385 | - | bglJ | b4366 | 0.30 | -0.0 |
4,602,411 | - | bglJ | b4366 | 0.34 | -0.2 |
4,602,411 | - | bglJ | b4366 | 0.34 | +0.0 |
4,602,438 | + | bglJ | b4366 | 0.38 | +0.1 |
4,602,439 | - | bglJ | b4366 | 0.38 | +1.6 |
4,602,439 | - | bglJ | b4366 | 0.38 | +0.7 |
4,602,479 | - | bglJ | b4366 | 0.44 | +0.4 |
4,602,485 | + | bglJ | b4366 | 0.45 | -1.1 |
4,602,485 | + | bglJ | b4366 | 0.45 | +0.1 |
4,602,485 | + | bglJ | b4366 | 0.45 | +0.5 |
4,602,488 | - | bglJ | b4366 | 0.45 | +0.2 |
4,602,493 | - | bglJ | b4366 | 0.46 | +0.6 |
4,602,493 | - | bglJ | b4366 | 0.46 | -0.9 |
4,602,502 | - | bglJ | b4366 | 0.47 | +0.9 |
4,602,507 | + | bglJ | b4366 | 0.48 | -0.3 |
4,602,507 | + | bglJ | b4366 | 0.48 | +0.4 |
4,602,514 | + | bglJ | b4366 | 0.49 | -0.3 |
4,602,514 | + | -0.6 | |||
4,602,515 | - | bglJ | b4366 | 0.49 | +1.2 |
4,602,515 | - | bglJ | b4366 | 0.49 | +0.1 |
4,602,517 | + | bglJ | b4366 | 0.49 | +0.8 |
4,602,517 | + | bglJ | b4366 | 0.49 | -0.4 |
4,602,526 | - | bglJ | b4366 | 0.51 | -0.1 |
4,602,529 | - | bglJ | b4366 | 0.51 | +0.3 |
4,602,529 | - | bglJ | b4366 | 0.51 | +0.3 |
4,602,537 | + | bglJ | b4366 | 0.52 | +0.1 |
4,602,585 | + | bglJ | b4366 | 0.59 | +0.2 |
4,602,585 | + | bglJ | b4366 | 0.59 | -0.8 |
4,602,587 | + | bglJ | b4366 | 0.60 | +1.3 |
4,602,588 | - | bglJ | b4366 | 0.60 | -0.0 |
4,602,588 | - | bglJ | b4366 | 0.60 | -0.4 |
4,602,588 | - | bglJ | b4366 | 0.60 | +0.1 |
4,602,592 | - | bglJ | b4366 | 0.60 | +0.3 |
4,602,596 | - | bglJ | b4366 | 0.61 | +0.5 |
4,602,596 | - | bglJ | b4366 | 0.61 | +0.3 |
4,602,609 | + | bglJ | b4366 | 0.63 | +0.4 |
4,602,610 | + | bglJ | b4366 | 0.63 | +0.6 |
4,602,614 | + | bglJ | b4366 | 0.64 | +0.2 |
4,602,614 | + | bglJ | b4366 | 0.64 | +0.0 |
4,602,614 | + | bglJ | b4366 | 0.64 | +0.5 |
4,602,614 | - | bglJ | b4366 | 0.64 | +0.5 |
4,602,618 | - | bglJ | b4366 | 0.64 | -0.2 |
4,602,619 | + | bglJ | b4366 | 0.64 | +0.3 |
4,602,619 | + | bglJ | b4366 | 0.64 | +1.0 |
4,602,619 | + | bglJ | b4366 | 0.64 | +0.7 |
4,602,619 | + | bglJ | b4366 | 0.64 | +0.6 |
4,602,619 | + | bglJ | b4366 | 0.64 | +0.2 |
4,602,619 | + | bglJ | b4366 | 0.64 | +0.1 |
4,602,637 | + | bglJ | b4366 | 0.67 | +0.5 |
4,602,637 | - | bglJ | b4366 | 0.67 | +0.4 |
4,602,667 | + | bglJ | b4366 | 0.71 | +0.5 |
4,602,675 | - | bglJ | b4366 | 0.73 | +0.8 |
4,602,675 | - | bglJ | b4366 | 0.73 | +0.5 |
4,602,680 | + | bglJ | b4366 | 0.73 | +0.9 |
4,602,686 | + | bglJ | b4366 | 0.74 | +0.3 |
4,602,690 | - | bglJ | b4366 | 0.75 | +0.4 |
4,602,693 | - | bglJ | b4366 | 0.75 | +0.2 |
4,602,693 | - | bglJ | b4366 | 0.75 | -0.1 |
4,602,718 | - | bglJ | b4366 | 0.79 | +0.2 |
4,602,718 | - | bglJ | b4366 | 0.79 | +0.5 |
4,602,718 | - | bglJ | b4366 | 0.79 | +0.6 |
4,602,718 | - | bglJ | b4366 | 0.79 | +0.4 |
4,602,719 | - | bglJ | b4366 | 0.79 | +0.2 |
4,602,736 | + | bglJ | b4366 | 0.82 | +0.6 |
4,602,753 | - | bglJ | b4366 | 0.84 | +0.1 |
4,602,763 | - | bglJ | b4366 | 0.86 | +0.6 |
4,602,763 | - | bglJ | b4366 | 0.86 | +0.4 |
4,602,783 | - | bglJ | b4366 | 0.88 | +1.0 |
4,602,783 | - | bglJ | b4366 | 0.88 | +0.1 |
4,602,783 | - | bglJ | b4366 | 0.88 | +0.3 |
4,602,783 | - | bglJ | b4366 | 0.88 | +0.7 |
4,602,783 | - | bglJ | b4366 | 0.88 | +0.3 |
4,602,786 | + | bglJ | b4366 | 0.89 | -0.0 |
4,602,786 | + | bglJ | b4366 | 0.89 | +0.2 |
4,602,788 | + | bglJ | b4366 | 0.89 | +0.5 |
4,602,788 | + | bglJ | b4366 | 0.89 | +0.2 |
4,602,788 | + | bglJ | b4366 | 0.89 | +0.2 |
4,602,789 | - | bglJ | b4366 | 0.89 | +0.9 |
4,602,789 | - | bglJ | b4366 | 0.89 | +0.4 |
4,602,799 | - | +1.5 | |||
4,602,810 | - | +0.3 | |||
4,602,819 | + | +0.4 | |||
4,602,824 | + | +0.7 | |||
4,602,835 | + | +1.1 | |||
4,602,849 | - | +1.0 | |||
4,602,854 | + | +0.4 | |||
4,602,860 | - | +0.3 | |||
4,602,877 | - | +0.4 | |||
4,602,877 | - | +0.1 | |||
4,602,877 | - | +0.4 | |||
4,602,894 | + | -0.2 | |||
4,602,894 | + | -0.5 | |||
4,602,904 | - | +0.8 | |||
4,602,930 | - | +0.7 | |||
4,602,932 | - | +0.4 | |||
4,602,938 | - | +0.5 | |||
4,602,953 | + | -0.0 | |||
4,602,969 | + | -0.2 | |||
4,602,969 | + | +1.1 | |||
4,602,970 | - | +0.5 | |||
4,602,972 | - | -0.1 | |||
4,602,972 | - | +0.7 | |||
4,602,987 | + | fhuF | b4367 | 0.11 | +1.0 |
4,602,987 | + | fhuF | b4367 | 0.11 | +0.4 |
4,602,987 | + | fhuF | b4367 | 0.11 | -0.1 |
4,602,995 | - | fhuF | b4367 | 0.12 | +1.2 |
4,602,995 | - | fhuF | b4367 | 0.12 | +1.3 |
4,603,006 | - | fhuF | b4367 | 0.14 | -0.3 |
4,603,015 | - | fhuF | b4367 | 0.15 | +0.5 |
4,603,015 | - | fhuF | b4367 | 0.15 | +0.2 |
4,603,068 | - | fhuF | b4367 | 0.22 | +0.3 |
4,603,076 | + | fhuF | b4367 | 0.23 | +0.5 |
4,603,100 | + | fhuF | b4367 | 0.26 | +0.2 |
4,603,102 | - | fhuF | b4367 | 0.26 | +0.5 |
4,603,103 | - | fhuF | b4367 | 0.26 | +0.1 |
4,603,103 | - | fhuF | b4367 | 0.26 | +0.5 |
4,603,165 | + | fhuF | b4367 | 0.34 | +0.5 |
4,603,175 | - | fhuF | b4367 | 0.35 | +0.4 |
4,603,204 | + | fhuF | b4367 | 0.39 | +0.1 |
4,603,207 | + | fhuF | b4367 | 0.39 | +0.5 |
4,603,207 | + | fhuF | b4367 | 0.39 | +0.7 |
4,603,232 | + | fhuF | b4367 | 0.42 | +0.2 |
4,603,312 | + | fhuF | b4367 | 0.52 | +0.7 |
4,603,360 | - | fhuF | b4367 | 0.59 | +0.7 |
4,603,369 | + | fhuF | b4367 | 0.60 | +0.6 |
4,603,385 | - | fhuF | b4367 | 0.62 | +1.1 |
4,603,385 | - | fhuF | b4367 | 0.62 | -0.4 |
4,603,388 | + | fhuF | b4367 | 0.62 | +0.3 |
4,603,388 | + | fhuF | b4367 | 0.62 | +0.6 |
4,603,393 | + | fhuF | b4367 | 0.63 | +0.3 |
4,603,405 | + | fhuF | b4367 | 0.64 | +0.3 |
4,603,519 | + | fhuF | b4367 | 0.79 | +0.6 |
4,603,847 | - | +0.0 | |||
4,603,872 | + | yjjZ | b4567 | 0.19 | +0.5 |
4,603,882 | + | yjjZ | b4567 | 0.23 | +0.2 |
4,603,927 | - | yjjZ | b4567 | 0.42 | +0.3 |
4,603,927 | - | yjjZ | b4567 | 0.42 | +0.1 |
4,603,935 | - | yjjZ | b4567 | 0.46 | +0.2 |
4,603,937 | + | yjjZ | b4567 | 0.46 | +0.2 |
4,604,119 | - | leuV | b4368 | 0.20 | -0.4 |
4,604,280 | - | leuP | b4369 | 0.66 | +0.5 |
4,604,280 | - | leuP | b4369 | 0.66 | +0.4 |
4,604,377 | - | leuQ | b4370 | 0.45 | -0.1 |
4,604,377 | - | leuQ | b4370 | 0.45 | -0.1 |
4,604,381 | - | leuQ | b4370 | 0.49 | -0.2 |
4,604,387 | + | leuQ | b4370 | 0.56 | -0.5 |
4,604,410 | + | leuQ | b4370 | 0.83 | +0.6 |
4,604,467 | + | +0.3 | |||
4,604,467 | + | +0.1 | |||
4,604,467 | + | -0.2 | |||
4,604,508 | - | +0.5 | |||
4,604,618 | - | +0.2 | |||
4,604,653 | - | +0.3 |
Or see this region's nucleotide sequence