Strain Fitness in Escherichia coli BW25113 around b1359

Experiment: LB + carbenicillin Time8hr

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntracR and ydaS are separated by 123 nucleotidesydaS and ydaT are separated by 22 nucleotidesydaT and ydaU are separated by 12 nucleotidesydaU and ydaV are separated by 6 nucleotidesydaV and ydaW overlap by 29 nucleotides b1356: racR - Rac prophage; predicted DNA-binding transcriptional regulator (NCBI), at 1,417,789 to 1,418,265 racR b1357: ydaS - Rac prophage; predicted DNA-binding transcriptional regulator (NCBI), at 1,418,389 to 1,418,685 ydaS b1358: ydaT - Rac prophage; predicted protein (NCBI), at 1,418,708 to 1,419,130 ydaT b1359: ydaU - Rac prophage; conserved protein (NCBI), at 1,419,143 to 1,420,000 ydaU b1360: ydaV - Rac prophage; predicted DNA replication protein (NCBI), at 1,420,007 to 1,420,753 ydaV b1361: ydaW - orf, hypothetical protein (VIMSS), at 1,420,725 to 1,421,224 ydaW Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -1 0 1at 1418.573 kb on - strand, within ydaSat 1418.619 kb on - strand, within ydaSat 1418.746 kb on - strandat 1418.848 kb on - strand, within ydaTat 1418.848 kb on - strand, within ydaTat 1419.186 kb on + strandat 1419.186 kb on + strandat 1419.235 kb on - strand, within ydaUat 1419.360 kb on - strand, within ydaUat 1419.393 kb on - strand, within ydaUat 1419.393 kb on - strand, within ydaUat 1419.797 kb on + strand, within ydaUat 1419.910 kb on + strand, within ydaUat 1419.933 kb on - strandat 1419.988 kb on - strandat 1420.068 kb on - strandat 1420.436 kb on - strand, within ydaVat 1420.589 kb on + strand, within ydaVat 1420.831 kb on - strand, within ydaW

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time8hr
remove
1,418,573 - ydaS b1357 0.62 +0.8
1,418,619 - ydaS b1357 0.77 -0.4
1,418,746 - +0.5
1,418,848 - ydaT b1358 0.33 +0.6
1,418,848 - ydaT b1358 0.33 -0.5
1,419,186 + +0.7
1,419,186 + -0.1
1,419,235 - ydaU b1359 0.11 +0.2
1,419,360 - ydaU b1359 0.25 +0.7
1,419,393 - ydaU b1359 0.29 +0.4
1,419,393 - ydaU b1359 0.29 -0.4
1,419,797 + ydaU b1359 0.76 +0.4
1,419,910 + ydaU b1359 0.89 +0.2
1,419,933 - +0.3
1,419,988 - -0.5
1,420,068 - +0.2
1,420,436 - ydaV b1360 0.57 +0.9
1,420,589 + ydaV b1360 0.78 -0.0
1,420,831 - ydaW b1361 0.21 +0.3

Or see this region's nucleotide sequence