Strain Fitness in Escherichia coli BW25113 around b3622

Experiment: LB + carbenicillin regrowth after 48hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin regrowth after 48hr
3,793,984	-				+0.0
3,794,047	-				-1.8
3,794,050	+				-2.0
3,794,050	+				-2.3
3,794,054	+				-0.4
3,794,054	+				-2.6
3,794,107	+	rfaC	b3621	0.11	-0.4
3,794,120	+	rfaC	b3621	0.12	-1.4
3,794,120	+	rfaC	b3621	0.12	-1.1
3,794,128	-	rfaC	b3621	0.13	+1.2
3,794,279	+	rfaC	b3621	0.29	-3.4
3,794,287	-	rfaC	b3621	0.30	-2.8
3,794,322	-	rfaC	b3621	0.33	+0.2
3,794,322	-	rfaC	b3621	0.33	-1.1
3,794,335	-	rfaC	b3621	0.35	-1.1
3,794,335	-	rfaC	b3621	0.35	-2.4
3,794,346	-	rfaC	b3621	0.36	-1.4
3,794,365	+	rfaC	b3621	0.38	-2.3
3,794,365	+	rfaC	b3621	0.38	-1.6
3,794,402	+	rfaC	b3621	0.42	-1.4
3,794,402	+	rfaC	b3621	0.42	-1.1
3,794,428	-	rfaC	b3621	0.44	-2.1
3,794,493	-	rfaC	b3621	0.51	-1.1
3,794,519	+	rfaC	b3621	0.54	-1.1
3,794,520	+	rfaC	b3621	0.54	-2.1
3,794,570	+	rfaC	b3621	0.59	-0.8
3,794,597	+				-1.4
3,794,597	+	rfaC	b3621	0.62	-0.8
3,794,612	+	rfaC	b3621	0.64	+0.2
3,794,713	-	rfaC	b3621	0.74	-0.8
3,794,713	-	rfaC	b3621	0.74	-0.4
3,794,728	+	rfaC	b3621	0.76	+1.2
3,794,728	+	rfaC	b3621	0.76	-2.1
3,794,729	+	rfaC	b3621	0.76	-2.7
3,794,729	+	rfaC	b3621	0.76	+0.2
3,794,730	+	rfaC	b3621	0.76	-1.8
3,794,765	+	rfaC	b3621	0.79	-1.6
3,794,765	+	rfaC	b3621	0.79	-0.4
3,794,765	+	rfaC	b3621	0.79	-1.4
3,794,765	+	rfaC	b3621	0.79	-1.1
3,794,773	+	rfaC	b3621	0.80	+1.2
3,794,773	+	rfaC	b3621	0.80	-3.1
3,794,778	+	rfaC	b3621	0.81	-1.1
3,794,781	+	rfaC	b3621	0.81	-2.0
3,794,809	+	rfaC	b3621	0.84	+0.2
3,794,809	+	rfaC	b3621	0.84	-0.8
3,794,809	+	rfaC	b3621	0.84	-2.1
3,794,814	+	rfaC	b3621	0.85	-2.1
3,794,814	+	rfaC	b3621	0.85	-1.1
3,794,814	+	rfaC	b3621	0.85	-0.8
3,794,814	+	rfaC	b3621	0.85	+0.2
3,794,820	+	rfaC	b3621	0.85	-0.1
3,794,820	+	rfaC	b3621	0.85	-2.7
3,794,860	+	rfaC	b3621	0.89	+0.2
3,794,860	+	rfaC	b3621	0.89	+0.2
3,794,867	+				-0.8
3,794,867	+				-0.4
3,794,867	+				+0.2
3,794,867	+				-0.8
3,794,867	+				-2.0
3,794,868	+				-1.4
3,794,868	+				-1.4
3,794,868	+				-1.8
3,794,868	+				-1.1
3,794,877	+				+0.2
3,794,879	+				-0.4
3,794,879	+				-1.8
3,794,879	+				+0.2
3,794,886	+				-0.4
3,794,886	+				-2.3
3,794,886	+				-2.7
3,794,887	+				-1.8
3,794,887	+				+0.2
3,794,887	+				-2.9
3,794,887	+				-0.4
3,794,887	+				-1.4
3,794,887	+				+0.2
3,794,887	+				-1.7
3,794,887	+				-0.4
3,794,887	+				-1.1
3,794,887	+				-1.6
3,794,887	+				-1.8
3,794,887	+				-2.8
3,794,887	+				-3.0
3,794,889	+				-2.6
3,794,889	+				+1.2
3,794,889	+				-2.3
3,794,889	+				-1.6
3,794,891	+				-1.8
3,794,917	+				-2.7
3,794,917	+				-1.4
3,794,917	+				-3.3
3,794,919	+				-3.8
3,794,927	+				-3.8
3,794,938	+				+0.1
3,794,943	-				+1.2
3,794,953	+				+0.6
3,795,003	+				+0.6
3,795,003	+				-0.7
3,795,003	+				-0.4
3,795,005	+				+1.2
3,795,146	-	rfaL	b3622	0.14	+1.2
3,795,275	-	rfaL	b3622	0.24	+1.2
3,795,373	+	rfaL	b3622	0.32	+1.2
3,795,423	+	rfaL	b3622	0.36	+1.2
3,795,423	+	rfaL	b3622	0.36	+1.2
3,795,463	+	rfaL	b3622	0.39	+1.2
3,795,463	+	rfaL	b3622	0.39	+1.2
3,795,472	-	rfaL	b3622	0.40	+1.2
3,795,474	+	rfaL	b3622	0.40	+1.2
3,795,489	+	rfaL	b3622	0.41	+1.2
3,795,489	+	rfaL	b3622	0.41	+1.2
3,795,489	+	rfaL	b3622	0.41	+0.2
3,795,494	+	rfaL	b3622	0.42	+1.2
3,795,494	+	rfaL	b3622	0.42	+1.2
3,795,514	+	rfaL	b3622	0.43	+1.2
3,795,521	-	rfaL	b3622	0.44	+1.2
3,795,522	-	rfaL	b3622	0.44	+1.2
3,795,597	+	rfaL	b3622	0.50	+1.2
3,795,609	+	rfaL	b3622	0.51	+1.2
3,795,609	+	rfaL	b3622	0.51	+2.2
3,795,627	-	rfaL	b3622	0.52	+1.2
3,795,628	-	rfaL	b3622	0.52	+1.2
3,795,706	-	rfaL	b3622	0.58	+1.2
3,795,747	-	rfaL	b3622	0.62	+1.2
3,795,773	-	rfaL	b3622	0.64	+1.2
3,795,792	-	rfaL	b3622	0.65	+1.2
3,795,792	-	rfaL	b3622	0.65	+1.2
3,795,794	+	rfaL	b3622	0.65	+0.2
3,795,801	-	rfaL	b3622	0.66	+0.2
3,795,801	-	rfaL	b3622	0.66	-0.4
3,795,818	+	rfaL	b3622	0.67	+1.2
3,795,835	-	rfaL	b3622	0.69	+1.2
3,795,835	-	rfaL	b3622	0.69	+1.2
3,795,835	-	rfaL	b3622	0.69	+1.2
3,795,835	-	rfaL	b3622	0.69	+1.2
3,795,841	-	rfaL	b3622	0.69	+2.2
3,795,893	+	rfaL	b3622	0.73	+2.2
3,795,901	-	rfaL	b3622	0.74	+1.2
3,795,901	-	rfaL	b3622	0.74	+1.2
3,795,901	-	rfaL	b3622	0.74	+1.2
3,795,936	+	rfaL	b3622	0.77	-0.0
3,795,938	+	rfaL	b3622	0.77	+1.2
3,795,939	+	rfaL	b3622	0.77	+2.2
3,795,939	+	rfaL	b3622	0.77	+1.2
3,795,939	+	rfaL	b3622	0.77	+2.8
3,795,939	+	rfaL	b3622	0.77	-0.4
3,795,939	+	rfaL	b3622	0.77	-1.1
3,795,942	-	rfaL	b3622	0.77	+1.2
3,795,943	+	rfaL	b3622	0.77	+1.2
3,795,944	+	rfaL	b3622	0.77	+1.2
3,795,944	+	rfaL	b3622	0.77	+2.2
3,795,944	+	rfaL	b3622	0.77	+1.2
3,795,944	+	rfaL	b3622	0.77	+2.2
3,795,944	+	rfaL	b3622	0.77	+2.2
3,795,945	+	rfaL	b3622	0.77	+0.6
3,795,945	+	rfaL	b3622	0.77	-1.1
3,795,950	+	rfaL	b3622	0.78	-0.9
3,795,950	+	rfaL	b3622	0.78	+3.2
3,795,955	+	rfaL	b3622	0.78	+1.2
3,795,955	+	rfaL	b3622	0.78	+1.2
3,795,970	+	rfaL	b3622	0.79	+1.7
3,795,970	+	rfaL	b3622	0.79	-0.1
3,795,971	+	rfaL	b3622	0.79	+0.2
3,795,971	+	rfaL	b3622	0.79	+1.2
3,795,978	+	rfaL	b3622	0.80	+1.0
3,795,978	-	rfaL	b3622	0.80	+0.8
3,795,981	+	rfaL	b3622	0.80	-0.6
3,795,997	-	rfaL	b3622	0.81	+1.2
3,795,997	-	rfaL	b3622	0.81	+1.2
3,796,005	+	rfaL	b3622	0.82	+0.3
3,796,015	+	rfaL	b3622	0.83	+0.1
3,796,059	+	rfaL	b3622	0.86	+1.1
3,796,107	+				+0.2
3,796,117	+				+0.5
3,796,117	+				+0.8
3,796,121	+				+0.7
3,796,122	+				+0.0
3,796,126	+				+0.2
3,796,130	+				-0.7
3,796,130	+				+0.4
3,796,131	+				+0.2
3,796,135	+				-0.4
3,796,135	+				+0.3
3,796,136	+				+0.4
3,796,139	-				+1.2
3,796,140	+				+1.0
3,796,140	+				+0.1
3,796,140	+				-0.2
3,796,140	+				-1.2
3,796,140	+				+0.2
3,796,140	+				-0.5
3,796,140	+				-0.2
3,796,142	+				-0.6
3,796,146	-				+1.2
3,796,149	+				+0.2
3,796,171	+				+1.1
3,796,171	+				-0.3
3,796,186	+				+0.1
3,796,261	-				+2.8
3,796,265	+				+1.2
3,796,296	-				+0.4
3,796,339	-				+0.3
3,796,339	-				+1.0
3,796,340	-				+0.9
3,796,346	-				-0.2
3,796,346	-				-1.8
3,796,405	-	rfaK	b3623	0.13	+1.5
3,796,481	-	rfaK	b3623	0.20	+1.0
3,796,526	-	rfaK	b3623	0.25	-1.1
3,796,529	-	rfaK	b3623	0.25	+0.2
3,796,529	-	rfaK	b3623	0.25	+0.2
3,796,552	-	rfaK	b3623	0.27	-1.4
3,796,667	-	rfaK	b3623	0.38	+3.2
3,796,667	-	rfaK	b3623	0.38	-0.8
3,796,701	-	rfaK	b3623	0.41	+1.2
3,796,705	-	rfaK	b3623	0.41	+2.2
3,796,830	-	rfaK	b3623	0.53	+0.2
3,796,889	-	rfaK	b3623	0.58	+0.2
3,796,955	+	rfaK	b3623	0.65	+1.2
3,796,981	-	rfaK	b3623	0.67	+2.8
3,796,981	-	rfaK	b3623	0.67	+3.5
3,796,981	-	rfaK	b3623	0.67	-0.8
3,796,991	-	rfaK	b3623	0.68	+1.2
3,796,999	-	rfaK	b3623	0.69	+2.2
3,796,999	-	rfaK	b3623	0.69	+1.2
3,797,015	-	rfaK	b3623	0.70	+0.6
3,797,015	-	rfaK	b3623	0.70	-1.4
3,797,015	-	rfaK	b3623	0.70	-1.8
3,797,015	-	rfaK	b3623	0.70	+0.9
3,797,015	-	rfaK	b3623	0.70	+1.2
3,797,015	-	rfaK	b3623	0.70	+2.8
3,797,017	-	rfaK	b3623	0.70	-0.1
3,797,025	-	rfaK	b3623	0.71	+2.8
3,797,190	-	rfaK	b3623	0.86	-0.8
3,797,190	-	rfaK	b3623	0.86	-1.1