Experiment: LB + carbenicillin Time24hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ypjC and ileY are separated by 750 nucleotides ileY and ygaQ are separated by 559 nucleotides
b2650: ypjC - hypothetical protein (RefSeq), at 2,781,660 to 2,783,033
ypjC
b2652: ileY - tRNA-Ile (NCBI), at 2,783,784 to 2,783,859
ileY
b4462: ygaQ - hypothetical protein (RefSeq), at 2,784,419 to 2,786,671
ygaQ
Position (kb)
2783
2784 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2783.288 kb on - strand at 2783.305 kb on - strand at 2783.305 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.318 kb on - strand at 2783.320 kb on - strand at 2783.321 kb on - strand at 2783.321 kb on - strand at 2783.350 kb on + strand at 2783.360 kb on + strand at 2783.360 kb on + strand at 2783.413 kb on + strand at 2783.413 kb on + strand at 2783.413 kb on + strand at 2783.413 kb on + strand at 2783.413 kb on + strand at 2783.418 kb on + strand at 2783.421 kb on - strand at 2783.423 kb on + strand at 2783.467 kb on - strand at 2783.638 kb on - strand at 2783.638 kb on - strand at 2783.643 kb on - strand at 2783.643 kb on - strand at 2783.650 kb on - strand at 2783.661 kb on - strand at 2783.661 kb on - strand at 2783.663 kb on - strand at 2783.664 kb on - strand at 2783.729 kb on - strand at 2783.731 kb on + strand at 2783.734 kb on + strand at 2783.737 kb on + strand at 2783.743 kb on + strand at 2783.743 kb on + strand at 2783.744 kb on + strand at 2783.745 kb on + strand at 2783.751 kb on - strand at 2783.751 kb on - strand at 2783.752 kb on + strand at 2783.756 kb on + strand at 2783.796 kb on - strand, within ileY at 2783.821 kb on - strand, within ileY at 2783.838 kb on - strand, within ileY at 2783.843 kb on - strand, within ileY at 2783.843 kb on - strand, within ileY at 2783.843 kb on - strand, within ileY at 2783.847 kb on + strand, within ileY at 2783.847 kb on + strand, within ileY at 2783.864 kb on - strand at 2783.864 kb on - strand at 2783.864 kb on - strand at 2783.888 kb on - strand at 2783.888 kb on - strand at 2783.952 kb on - strand at 2783.956 kb on - strand at 2783.967 kb on - strand at 2783.979 kb on + strand at 2783.986 kb on - strand at 2783.994 kb on - strand at 2784.011 kb on - strand at 2784.024 kb on - strand at 2784.044 kb on - strand at 2784.053 kb on - strand at 2784.059 kb on - strand at 2784.380 kb on + strand at 2784.797 kb on + strand, within ygaQ at 2784.832 kb on + strand, within ygaQ
Per-strain Table
Position Strand Gene LocusTag Fraction LB + carbenicillin Time24hr remove 2,783,288 - +0.4 2,783,305 - +2.1 2,783,305 - +0.4 2,783,318 - +1.0 2,783,318 - +0.4 2,783,318 - +0.4 2,783,318 - +1.4 2,783,318 - +0.4 2,783,318 - -0.6 2,783,318 - +0.4 2,783,318 - +0.4 2,783,318 - -0.6 2,783,318 - +0.4 2,783,318 - +0.8 2,783,318 - +0.4 2,783,318 - +0.4 2,783,320 - +0.4 2,783,321 - +0.4 2,783,321 - +0.4 2,783,350 + -0.6 2,783,360 + -0.6 2,783,360 + -0.6 2,783,413 + -0.6 2,783,413 + +0.0 2,783,413 + +0.4 2,783,413 + +2.4 2,783,413 + +2.5 2,783,418 + +0.4 2,783,421 - +0.4 2,783,423 + -1.2 2,783,467 - +0.4 2,783,638 - +0.7 2,783,638 - +0.0 2,783,643 - +0.1 2,783,643 - +1.1 2,783,650 - +0.2 2,783,661 - -0.2 2,783,661 - -0.6 2,783,663 - +0.1 2,783,664 - +2.4 2,783,729 - +0.4 2,783,731 + +0.5 2,783,734 + -0.6 2,783,737 + +0.4 2,783,743 + +0.0 2,783,743 + -3.3 2,783,744 + -0.0 2,783,745 + -1.2 2,783,751 - -0.6 2,783,751 - +0.4 2,783,752 + +1.7 2,783,756 + -1.8 2,783,796 - ileY b2652 0.16 +0.1 2,783,821 - ileY b2652 0.49 +2.0 2,783,838 - ileY b2652 0.71 +0.4 2,783,843 - ileY b2652 0.78 +0.4 2,783,843 - ileY b2652 0.78 -1.6 2,783,843 - ileY b2652 0.78 +0.4 2,783,847 + ileY b2652 0.83 +0.4 2,783,847 + ileY b2652 0.83 +0.4 2,783,864 - +0.4 2,783,864 - +0.4 2,783,864 - +1.4 2,783,888 - +0.6 2,783,888 - -0.1 2,783,952 - +1.1 2,783,956 - +0.6 2,783,967 - -0.2 2,783,979 + +0.4 2,783,986 - +1.4 2,783,994 - +1.4 2,784,011 - -0.6 2,784,024 - +0.4 2,784,044 - +0.4 2,784,053 - +0.4 2,784,059 - +0.4 2,784,380 + -1.2 2,784,797 + ygaQ b4462 0.17 +0.4 2,784,832 + ygaQ b4462 0.18 +0.4
Or see this region's nucleotide sequence