Strain Fitness in Escherichia coli BW25113 around b2652

Experiment: LB + carbenicillin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntypjC and ileY are separated by 750 nucleotidesileY and ygaQ are separated by 559 nucleotides b2650: ypjC - hypothetical protein (RefSeq), at 2,781,660 to 2,783,033 ypjC b2652: ileY - tRNA-Ile (NCBI), at 2,783,784 to 2,783,859 ileY b4462: ygaQ - hypothetical protein (RefSeq), at 2,784,419 to 2,786,671 ygaQ Position (kb) 2783 2784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2783.288 kb on - strandat 2783.305 kb on - strandat 2783.305 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.318 kb on - strandat 2783.320 kb on - strandat 2783.321 kb on - strandat 2783.321 kb on - strandat 2783.350 kb on + strandat 2783.360 kb on + strandat 2783.360 kb on + strandat 2783.413 kb on + strandat 2783.413 kb on + strandat 2783.413 kb on + strandat 2783.413 kb on + strandat 2783.413 kb on + strandat 2783.418 kb on + strandat 2783.421 kb on - strandat 2783.423 kb on + strandat 2783.467 kb on - strandat 2783.638 kb on - strandat 2783.638 kb on - strandat 2783.643 kb on - strandat 2783.643 kb on - strandat 2783.650 kb on - strandat 2783.661 kb on - strandat 2783.661 kb on - strandat 2783.663 kb on - strandat 2783.664 kb on - strandat 2783.729 kb on - strandat 2783.731 kb on + strandat 2783.734 kb on + strandat 2783.737 kb on + strandat 2783.743 kb on + strandat 2783.743 kb on + strandat 2783.744 kb on + strandat 2783.745 kb on + strandat 2783.751 kb on - strandat 2783.751 kb on - strandat 2783.752 kb on + strandat 2783.756 kb on + strandat 2783.796 kb on - strand, within ileYat 2783.821 kb on - strand, within ileYat 2783.838 kb on - strand, within ileYat 2783.843 kb on - strand, within ileYat 2783.843 kb on - strand, within ileYat 2783.843 kb on - strand, within ileYat 2783.847 kb on + strand, within ileYat 2783.847 kb on + strand, within ileYat 2783.864 kb on - strandat 2783.864 kb on - strandat 2783.864 kb on - strandat 2783.888 kb on - strandat 2783.888 kb on - strandat 2783.952 kb on - strandat 2783.956 kb on - strandat 2783.967 kb on - strandat 2783.979 kb on + strandat 2783.986 kb on - strandat 2783.994 kb on - strandat 2784.011 kb on - strandat 2784.024 kb on - strandat 2784.044 kb on - strandat 2784.053 kb on - strandat 2784.059 kb on - strandat 2784.380 kb on + strandat 2784.797 kb on + strand, within ygaQat 2784.832 kb on + strand, within ygaQ

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time24hr
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2,783,288 - +0.4
2,783,305 - +2.1
2,783,305 - +0.4
2,783,318 - +1.0
2,783,318 - +0.4
2,783,318 - +0.4
2,783,318 - +1.4
2,783,318 - +0.4
2,783,318 - -0.6
2,783,318 - +0.4
2,783,318 - +0.4
2,783,318 - -0.6
2,783,318 - +0.4
2,783,318 - +0.8
2,783,318 - +0.4
2,783,318 - +0.4
2,783,320 - +0.4
2,783,321 - +0.4
2,783,321 - +0.4
2,783,350 + -0.6
2,783,360 + -0.6
2,783,360 + -0.6
2,783,413 + -0.6
2,783,413 + +0.0
2,783,413 + +0.4
2,783,413 + +2.4
2,783,413 + +2.5
2,783,418 + +0.4
2,783,421 - +0.4
2,783,423 + -1.2
2,783,467 - +0.4
2,783,638 - +0.7
2,783,638 - +0.0
2,783,643 - +0.1
2,783,643 - +1.1
2,783,650 - +0.2
2,783,661 - -0.2
2,783,661 - -0.6
2,783,663 - +0.1
2,783,664 - +2.4
2,783,729 - +0.4
2,783,731 + +0.5
2,783,734 + -0.6
2,783,737 + +0.4
2,783,743 + +0.0
2,783,743 + -3.3
2,783,744 + -0.0
2,783,745 + -1.2
2,783,751 - -0.6
2,783,751 - +0.4
2,783,752 + +1.7
2,783,756 + -1.8
2,783,796 - ileY b2652 0.16 +0.1
2,783,821 - ileY b2652 0.49 +2.0
2,783,838 - ileY b2652 0.71 +0.4
2,783,843 - ileY b2652 0.78 +0.4
2,783,843 - ileY b2652 0.78 -1.6
2,783,843 - ileY b2652 0.78 +0.4
2,783,847 + ileY b2652 0.83 +0.4
2,783,847 + ileY b2652 0.83 +0.4
2,783,864 - +0.4
2,783,864 - +0.4
2,783,864 - +1.4
2,783,888 - +0.6
2,783,888 - -0.1
2,783,952 - +1.1
2,783,956 - +0.6
2,783,967 - -0.2
2,783,979 + +0.4
2,783,986 - +1.4
2,783,994 - +1.4
2,784,011 - -0.6
2,784,024 - +0.4
2,784,044 - +0.4
2,784,053 - +0.4
2,784,059 - +0.4
2,784,380 + -1.2
2,784,797 + ygaQ b4462 0.17 +0.4
2,784,832 + ygaQ b4462 0.18 +0.4

Or see this region's nucleotide sequence