Strain Fitness in Escherichia coli BW25113 around b2261

Experiment: LB + carbenicillin Time24hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmenE and menC overlap by 4 nucleotidesmenC and menB overlap by 1 nucleotidesmenB and yfbB are separated by 14 nucleotides b2260: menE - O-succinylbenzoic acid--CoA ligase (NCBI), at 2,371,670 to 2,373,025 menE b2261: menC - O-succinylbenzoate synthase (NCBI), at 2,373,022 to 2,373,984 menC b2262: menB - naphthoate synthase (NCBI), at 2,373,984 to 2,374,841 menB b2263: yfbB - predicted peptidase (NCBI), at 2,374,856 to 2,375,614 yfbB Position (kb) 2373 2374Strain fitness (log2 ratio) -1 0 1 2at 2372.168 kb on - strand, within menEat 2372.209 kb on + strand, within menEat 2372.209 kb on + strand, within menEat 2372.223 kb on - strand, within menEat 2372.345 kb on - strand, within menEat 2372.355 kb on - strand, within menEat 2372.366 kb on - strand, within menEat 2372.401 kb on + strand, within menEat 2372.504 kb on - strand, within menEat 2372.564 kb on - strand, within menEat 2372.565 kb on - strand, within menEat 2372.569 kb on - strand, within menEat 2372.635 kb on + strand, within menEat 2372.747 kb on - strand, within menEat 2372.747 kb on - strand, within menEat 2372.812 kb on - strand, within menEat 2372.885 kb on - strand, within menEat 2372.903 kb on + strandat 2372.903 kb on + strandat 2372.986 kb on + strandat 2373.079 kb on + strandat 2373.079 kb on + strandat 2373.115 kb on + strandat 2373.146 kb on - strand, within menCat 2373.146 kb on - strand, within menCat 2373.146 kb on - strand, within menCat 2373.241 kb on - strand, within menCat 2373.255 kb on + strand, within menCat 2373.493 kb on - strand, within menCat 2373.493 kb on - strand, within menCat 2373.550 kb on - strand, within menCat 2373.559 kb on + strand, within menCat 2373.559 kb on + strand, within menCat 2373.733 kb on + strand, within menCat 2373.733 kb on + strand, within menCat 2373.743 kb on - strand, within menCat 2373.743 kb on - strand, within menCat 2373.925 kb on + strandat 2373.930 kb on + strandat 2373.930 kb on + strandat 2374.136 kb on + strand, within menBat 2374.254 kb on - strand, within menBat 2374.373 kb on + strand, within menBat 2374.491 kb on + strand, within menBat 2374.673 kb on - strand, within menBat 2374.831 kb on + strandat 2374.831 kb on + strandat 2374.885 kb on + strandat 2374.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time24hr
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2,372,168 - menE b2260 0.37 +0.3
2,372,209 + menE b2260 0.40 -0.3
2,372,209 + menE b2260 0.40 +0.5
2,372,223 - menE b2260 0.41 +0.4
2,372,345 - menE b2260 0.50 +0.4
2,372,355 - menE b2260 0.51 +0.1
2,372,366 - menE b2260 0.51 +0.4
2,372,401 + menE b2260 0.54 -0.1
2,372,504 - menE b2260 0.62 +0.7
2,372,564 - menE b2260 0.66 +0.1
2,372,565 - menE b2260 0.66 +0.3
2,372,569 - menE b2260 0.66 +0.1
2,372,635 + menE b2260 0.71 +0.8
2,372,747 - menE b2260 0.79 +0.1
2,372,747 - menE b2260 0.79 -0.1
2,372,812 - menE b2260 0.84 +0.5
2,372,885 - menE b2260 0.90 +0.1
2,372,903 + +2.0
2,372,903 + +1.2
2,372,986 + -0.1
2,373,079 + +1.3
2,373,079 + +0.2
2,373,115 + +0.3
2,373,146 - menC b2261 0.13 +0.2
2,373,146 - menC b2261 0.13 -0.3
2,373,146 - menC b2261 0.13 +1.2
2,373,241 - menC b2261 0.23 +0.6
2,373,255 + menC b2261 0.24 +0.5
2,373,493 - menC b2261 0.49 +0.4
2,373,493 - menC b2261 0.49 +0.8
2,373,550 - menC b2261 0.55 +0.5
2,373,559 + menC b2261 0.56 -0.7
2,373,559 + menC b2261 0.56 +0.9
2,373,733 + menC b2261 0.74 +0.1
2,373,733 + menC b2261 0.74 +0.2
2,373,743 - menC b2261 0.75 +0.5
2,373,743 - menC b2261 0.75 +0.2
2,373,925 + +0.4
2,373,930 + +0.4
2,373,930 + -0.1
2,374,136 + menB b2262 0.18 +0.1
2,374,254 - menB b2262 0.31 +0.0
2,374,373 + menB b2262 0.45 -0.0
2,374,491 + menB b2262 0.59 -0.6
2,374,673 - menB b2262 0.80 +0.4
2,374,831 + +0.4
2,374,831 + +0.7
2,374,885 + +0.3
2,374,893 - -0.1

Or see this region's nucleotide sequence