Strain Fitness in Escherichia coli BW25113 around b0798

Experiment: LB + ciprofloxacin Time9hr

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrhlE and ybiA are separated by 231 nucleotidesybiA and dinG are separated by 119 nucleotides b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459 rhlE b0798: ybiA - hypothetical protein (NCBI), at 831,691 to 832,173 ybiA b0799: dinG - ATP-dependent DNA helicase (NCBI), at 832,293 to 834,443 dinG Position (kb) 831 832 833Strain fitness (log2 ratio) -1 0 1at 830.836 kb on + strand, within rhlEat 830.850 kb on - strand, within rhlEat 830.860 kb on - strand, within rhlEat 830.860 kb on - strand, within rhlEat 831.483 kb on + strandat 831.535 kb on - strandat 831.542 kb on - strandat 831.542 kb on - strandat 831.679 kb on + strandat 831.679 kb on + strandat 831.733 kb on - strandat 831.733 kb on - strandat 831.752 kb on + strand, within ybiAat 831.752 kb on + strand, within ybiAat 831.942 kb on - strand, within ybiAat 832.127 kb on + strandat 832.127 kb on + strandat 832.158 kb on - strandat 832.250 kb on + strandat 832.353 kb on - strandat 832.645 kb on + strand, within dinGat 832.645 kb on + strand, within dinGat 832.673 kb on + strand, within dinGat 832.692 kb on + strand, within dinGat 833.081 kb on - strand, within dinGat 833.102 kb on + strand, within dinG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time9hr
remove
830,836 + rhlE b0797 0.54 +0.6
830,850 - rhlE b0797 0.55 +0.7
830,860 - rhlE b0797 0.56 +0.6
830,860 - rhlE b0797 0.56 +0.1
831,483 + -0.0
831,535 - +0.0
831,542 - -0.4
831,542 - -0.4
831,679 + +0.9
831,679 + +0.6
831,733 - +0.4
831,733 - +0.7
831,752 + ybiA b0798 0.13 +1.3
831,752 + ybiA b0798 0.13 +0.7
831,942 - ybiA b0798 0.52 +0.3
832,127 + -0.1
832,127 + -0.6
832,158 - +0.1
832,250 + +0.4
832,353 - +0.2
832,645 + dinG b0799 0.16 +0.1
832,645 + dinG b0799 0.16 +1.1
832,673 + dinG b0799 0.18 +0.8
832,692 + dinG b0799 0.19 +0.4
833,081 - dinG b0799 0.37 -0.1
833,102 + dinG b0799 0.38 +0.2

Or see this region's nucleotide sequence