Experiment: LB + ciprofloxacin Time9hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcM and ylcH are separated by 116 nucleotides ylcH and ybcN overlap by 4 nucleotides ybcN and ninE overlap by 1 nucleotides ninE and ybcO overlap by 8 nucleotides ybcO and rusA overlap by 4 nucleotides rusA and ylcG overlap by 4 nucleotides
b0546: ybcM - DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 570,677 to 571,474
ybcM
b4588: ylcH - hypothetical protein, DLP12 prophage (RefSeq), at 571,591 to 571,692
ylcH
b0547: ybcN - DLP12 prophage; predicted protein (NCBI), at 571,689 to 572,144
ybcN
b0548: ninE - DLP12 prophage; conserved protein (NCBI), at 572,144 to 572,314
ninE
b0549: ybcO - DLP12 prophage; predicted protein (NCBI), at 572,307 to 572,597
ybcO
b0550: rusA - DLP12 prophage; endonuclease RUS (NCBI), at 572,594 to 572,956
rusA
b4509: ylcG - DLP12 prophage; predicted protein (NCBI), at 572,953 to 573,093
ylcG
Position (kb) 571
572
573 Strain fitness (log2 ratio) -1
0
1
2 at 570.697 kb on - strand at 570.772 kb on + strand, within ybcM at 570.772 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.817 kb on + strand, within ybcM at 570.896 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 571.055 kb on + strand, within ybcM at 571.084 kb on - strand, within ybcM at 571.094 kb on - strand, within ybcM at 571.105 kb on + strand, within ybcM at 571.115 kb on + strand, within ybcM at 571.124 kb on - strand, within ybcM at 571.130 kb on - strand, within ybcM at 571.170 kb on - strand, within ybcM at 571.186 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.215 kb on - strand, within ybcM at 571.226 kb on + strand, within ybcM at 571.283 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.306 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.341 kb on - strand, within ybcM at 571.345 kb on - strand, within ybcM at 571.358 kb on - strand, within ybcM at 571.418 kb on + strand at 571.427 kb on + strand at 571.477 kb on - strand at 571.486 kb on - strand at 571.546 kb on - strand at 571.560 kb on - strand at 571.575 kb on - strand at 571.575 kb on - strand at 571.585 kb on - strand at 571.596 kb on + strand at 571.596 kb on - strand at 571.596 kb on - strand at 571.602 kb on - strand, within ylcH at 571.618 kb on + strand, within ylcH at 571.623 kb on - strand, within ylcH at 571.629 kb on + strand, within ylcH at 571.638 kb on - strand, within ylcH at 571.671 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.687 kb on + strand at 571.694 kb on - strand at 571.695 kb on - strand at 571.752 kb on + strand, within ybcN at 571.752 kb on + strand, within ybcN at 571.909 kb on + strand, within ybcN at 571.931 kb on + strand, within ybcN at 571.937 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 572.055 kb on + strand, within ybcN at 572.068 kb on - strand, within ybcN at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.195 kb on - strand, within ninE at 572.214 kb on - strand, within ninE at 572.343 kb on - strand, within ybcO at 572.557 kb on - strand, within ybcO at 572.617 kb on + strand at 572.625 kb on - strand at 572.679 kb on - strand, within rusA at 572.679 kb on - strand, within rusA at 572.697 kb on - strand, within rusA at 572.697 kb on - strand, within rusA at 572.780 kb on + strand, within rusA at 572.899 kb on - strand, within rusA at 572.981 kb on - strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.078 kb on - strand, within ylcG at 573.080 kb on + strand at 573.088 kb on - strand at 573.094 kb on + strand at 573.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time9hr remove 570,697 - +0.3 570,772 + ybcM b0546 0.12 +0.6 570,772 + ybcM b0546 0.12 +0.4 570,804 + ybcM b0546 0.16 +1.0 570,804 + ybcM b0546 0.16 +0.3 570,804 + ybcM b0546 0.16 +1.2 570,804 + ybcM b0546 0.16 +0.0 570,804 + ybcM b0546 0.16 +0.6 570,817 + ybcM b0546 0.18 +1.0 570,896 + ybcM b0546 0.27 +0.3 570,992 + ybcM b0546 0.39 +0.7 570,992 + ybcM b0546 0.39 -0.1 571,055 + ybcM b0546 0.47 -1.0 571,084 - ybcM b0546 0.51 +0.3 571,094 - ybcM b0546 0.52 +0.3 571,105 + ybcM b0546 0.54 +0.3 571,115 + ybcM b0546 0.55 -1.3 571,124 - ybcM b0546 0.56 +0.3 571,130 - ybcM b0546 0.57 +0.3 571,170 - ybcM b0546 0.62 +0.9 571,186 + ybcM b0546 0.64 +0.3 571,207 + ybcM b0546 0.66 +0.2 571,207 + ybcM b0546 0.66 +0.3 571,215 - ybcM b0546 0.67 +0.3 571,226 + ybcM b0546 0.69 -0.2 571,283 + ybcM b0546 0.76 +0.5 571,301 + ybcM b0546 0.78 -0.3 571,301 + ybcM b0546 0.78 -0.4 571,306 + ybcM b0546 0.79 -0.5 571,340 + ybcM b0546 0.83 +2.3 571,340 + ybcM b0546 0.83 +0.3 571,340 + ybcM b0546 0.83 +1.0 571,340 + ybcM b0546 0.83 +1.3 571,341 - ybcM b0546 0.83 +0.3 571,345 - ybcM b0546 0.84 +0.3 571,358 - ybcM b0546 0.85 +0.3 571,418 + +0.5 571,427 + +1.0 571,477 - +0.3 571,486 - +0.3 571,546 - -0.4 571,560 - +0.4 571,575 - +0.8 571,575 - +1.0 571,585 - +0.2 571,596 + +0.3 571,596 - +0.1 571,596 - +0.1 571,602 - ylcH b4588 0.11 +0.4 571,618 + ylcH b4588 0.26 -0.1 571,623 - ylcH b4588 0.31 +0.5 571,629 + ylcH b4588 0.37 +0.0 571,638 - ylcH b4588 0.46 -0.1 571,671 + ylcH b4588 0.78 -0.2 571,681 + ylcH b4588 0.88 +0.9 571,681 + ylcH b4588 0.88 -0.2 571,682 - +0.4 571,682 - +0.0 571,682 - +1.9 571,682 - +0.7 571,682 - +0.3 571,682 - +0.1 571,682 - +0.3 571,687 + -0.8 571,694 - -0.4 571,695 - -0.0 571,752 + ybcN b0547 0.14 +0.0 571,752 + ybcN b0547 0.14 +1.1 571,909 + ybcN b0547 0.48 +0.6 571,931 + ybcN b0547 0.53 +0.3 571,937 - ybcN b0547 0.54 +0.3 571,939 - ybcN b0547 0.55 +0.2 571,939 - ybcN b0547 0.55 +0.1 572,055 + ybcN b0547 0.80 +0.4 572,068 - ybcN b0547 0.83 +0.3 572,179 + ninE b0548 0.20 -0.3 572,179 + ninE b0548 0.20 -0.1 572,179 + ninE b0548 0.20 +0.3 572,195 - ninE b0548 0.30 -0.0 572,214 - ninE b0548 0.41 -0.0 572,343 - ybcO b0549 0.12 -1.0 572,557 - ybcO b0549 0.86 +0.5 572,617 + -0.1 572,625 - +0.3 572,679 - rusA b0550 0.23 +0.0 572,679 - rusA b0550 0.23 +0.3 572,697 - rusA b0550 0.28 -0.1 572,697 - rusA b0550 0.28 -0.4 572,780 + rusA b0550 0.51 +0.2 572,899 - rusA b0550 0.84 +0.3 572,981 - ylcG b4509 0.20 +0.3 573,031 + ylcG b4509 0.55 -0.5 573,031 + ylcG b4509 0.55 -0.0 573,078 - ylcG b4509 0.89 +0.3 573,080 + -0.3 573,088 - +0.0 573,094 + +0.3 573,141 + +0.1
Or see this region's nucleotide sequence