Experiment: P. put PUT 10 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0743 and PP_0744 are separated by 13 nucleotides PP_0744 and PP_0745 are separated by 35 nucleotides
PP_0743: PP_0743 - conserved protein with NAD(P)-binding Rossmann-fold domain, at 861,948 to 862,853
_0743
PP_0744: PP_0744 - Ferrochelatase, at 862,867 to 863,883
_0744
PP_0745: PP_0745 - putative uracil permease, at 863,919 to 865,184
_0745
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 861.867 kb on - strand at 861.867 kb on - strand at 861.909 kb on + strand at 861.916 kb on - strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.953 kb on + strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.954 kb on - strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.955 kb on + strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 861.956 kb on - strand at 862.108 kb on + strand, within PP_0743 at 862.108 kb on + strand, within PP_0743 at 862.109 kb on - strand, within PP_0743 at 862.109 kb on - strand at 862.109 kb on - strand, within PP_0743 at 862.300 kb on - strand, within PP_0743 at 862.373 kb on + strand, within PP_0743 at 862.374 kb on - strand, within PP_0743 at 862.417 kb on + strand, within PP_0743 at 862.417 kb on + strand, within PP_0743 at 862.418 kb on - strand, within PP_0743 at 862.426 kb on + strand, within PP_0743 at 862.427 kb on - strand, within PP_0743 at 862.427 kb on - strand, within PP_0743 at 862.550 kb on + strand, within PP_0743 at 862.551 kb on - strand, within PP_0743 at 862.551 kb on - strand, within PP_0743 at 862.552 kb on + strand, within PP_0743 at 862.553 kb on - strand, within PP_0743 at 862.553 kb on - strand, within PP_0743 at 862.611 kb on + strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.612 kb on - strand, within PP_0743 at 862.613 kb on + strand, within PP_0743 at 862.613 kb on + strand, within PP_0743 at 863.865 kb on + strand at 863.865 kb on + strand at 863.865 kb on + strand at 863.865 kb on + strand at 863.922 kb on + strand at 863.922 kb on + strand at 863.922 kb on + strand at 863.922 kb on + strand at 863.923 kb on - strand at 863.923 kb on - strand at 863.923 kb on - strand at 863.923 kb on - strand at 863.923 kb on - strand at 863.923 kb on - strand at 863.982 kb on - strand at 864.248 kb on + strand, within PP_0745 at 864.248 kb on + strand, within PP_0745 at 864.249 kb on - strand, within PP_0745 at 864.289 kb on + strand, within PP_0745 at 864.290 kb on - strand, within PP_0745 at 864.290 kb on - strand, within PP_0745 at 864.290 kb on - strand, within PP_0745 at 864.328 kb on + strand, within PP_0745 at 864.328 kb on + strand at 864.328 kb on + strand, within PP_0745 at 864.329 kb on - strand, within PP_0745 at 864.368 kb on + strand, within PP_0745 at 864.422 kb on - strand, within PP_0745 at 864.422 kb on - strand, within PP_0745 at 864.728 kb on - strand, within PP_0745
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 0.1 remove 861,867 - +0.6 861,867 - +0.1 861,909 + -0.7 861,916 - -0.0 861,953 + +0.5 861,953 + -0.5 861,953 + -0.2 861,953 + +0.4 861,953 + +1.6 861,953 + +1.3 861,954 - -0.1 861,954 - -0.5 861,954 - +0.1 861,954 - -2.1 861,954 - -1.1 861,954 - -0.6 861,954 - +0.4 861,954 - +0.6 861,954 - +0.8 861,954 - -1.0 861,954 - -0.3 861,954 - +3.8 861,954 - -1.6 861,955 + -0.5 861,955 + +1.8 861,955 + -0.6 861,955 + -0.5 861,955 + +1.0 861,955 + +0.2 861,955 + +0.4 861,955 + -1.1 861,955 + +2.3 861,956 - +1.2 861,956 - +0.2 861,956 - +0.1 861,956 - +0.6 861,956 - -2.2 862,108 + PP_0743 0.18 +0.6 862,108 + PP_0743 0.18 -0.1 862,109 - PP_0743 0.18 -0.8 862,109 - +1.2 862,109 - PP_0743 0.18 -0.8 862,300 - PP_0743 0.39 +0.4 862,373 + PP_0743 0.47 +0.7 862,374 - PP_0743 0.47 -1.2 862,417 + PP_0743 0.52 +1.3 862,417 + PP_0743 0.52 -0.2 862,418 - PP_0743 0.52 -0.3 862,426 + PP_0743 0.53 +0.1 862,427 - PP_0743 0.53 +0.1 862,427 - PP_0743 0.53 -0.8 862,550 + PP_0743 0.66 -0.6 862,551 - PP_0743 0.67 -0.3 862,551 - PP_0743 0.67 -0.7 862,552 + PP_0743 0.67 +0.0 862,553 - PP_0743 0.67 -0.2 862,553 - PP_0743 0.67 -0.3 862,611 + PP_0743 0.73 -0.9 862,612 - PP_0743 0.73 -0.5 862,612 - PP_0743 0.73 -2.1 862,612 - PP_0743 0.73 -0.6 862,612 - PP_0743 0.73 +0.2 862,612 - PP_0743 0.73 -0.9 862,613 + PP_0743 0.73 -1.5 862,613 + PP_0743 0.73 -0.2 863,865 + -1.1 863,865 + -1.2 863,865 + -0.2 863,865 + -1.3 863,922 + +1.1 863,922 + -0.1 863,922 + -0.9 863,922 + -0.1 863,923 - -0.1 863,923 - -1.7 863,923 - +1.0 863,923 - +0.8 863,923 - +0.5 863,923 - +0.4 863,982 - +0.7 864,248 + PP_0745 0.26 -0.7 864,248 + PP_0745 0.26 +0.5 864,249 - PP_0745 0.26 -1.0 864,289 + PP_0745 0.29 +0.8 864,290 - PP_0745 0.29 +1.1 864,290 - PP_0745 0.29 -0.1 864,290 - PP_0745 0.29 +0.1 864,328 + PP_0745 0.32 -0.3 864,328 + +0.7 864,328 + PP_0745 0.32 -0.3 864,329 - PP_0745 0.32 +0.0 864,368 + PP_0745 0.35 -0.1 864,422 - PP_0745 0.40 +0.0 864,422 - PP_0745 0.40 +0.0 864,728 - PP_0745 0.64 +0.5
Or see this region's nucleotide sequence