Experiment: P. put PUT 10 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0072 and PP_0073 are separated by 132 nucleotides PP_0073 and PP_0074 are separated by 25 nucleotides PP_0074 and PP_0075 are separated by 129 nucleotides
PP_0072: PP_0072 - quinone oxidoreductase, at 82,151 to 83,128
_0072
PP_0073: PP_0073 - Coproporphyrinogen-III oxidase, aerobic, at 83,261 to 84,172
_0073
PP_0074: PP_0074 - shikimate 5-dehydrogenase, at 84,198 to 85,022
_0074
PP_0075: PP_0075 - putative choline sulfate transporter, at 85,152 to 86,717
_0075
Position (kb) 83
84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.323 kb on + strand, within PP_0072 at 82.324 kb on - strand, within PP_0072 at 82.324 kb on - strand, within PP_0072 at 82.350 kb on + strand, within PP_0072 at 82.351 kb on - strand, within PP_0072 at 82.351 kb on - strand, within PP_0072 at 82.351 kb on - strand, within PP_0072 at 82.351 kb on - strand, within PP_0072 at 82.488 kb on + strand, within PP_0072 at 82.488 kb on + strand, within PP_0072 at 82.488 kb on + strand, within PP_0072 at 82.488 kb on + strand, within PP_0072 at 82.489 kb on - strand, within PP_0072 at 82.489 kb on - strand, within PP_0072 at 82.489 kb on - strand, within PP_0072 at 82.527 kb on - strand, within PP_0072 at 82.671 kb on - strand, within PP_0072 at 82.671 kb on - strand, within PP_0072 at 82.671 kb on - strand, within PP_0072 at 82.671 kb on - strand, within PP_0072 at 82.722 kb on + strand, within PP_0072 at 82.722 kb on + strand, within PP_0072 at 82.722 kb on + strand, within PP_0072 at 82.722 kb on + strand, within PP_0072 at 82.722 kb on + strand, within PP_0072 at 82.723 kb on - strand, within PP_0072 at 82.723 kb on - strand, within PP_0072 at 82.723 kb on - strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.740 kb on + strand, within PP_0072 at 82.741 kb on - strand, within PP_0072 at 82.827 kb on - strand, within PP_0072 at 82.831 kb on + strand, within PP_0072 at 82.831 kb on + strand, within PP_0072 at 82.831 kb on + strand, within PP_0072 at 82.831 kb on + strand, within PP_0072 at 82.832 kb on - strand, within PP_0072 at 82.832 kb on - strand, within PP_0072 at 82.846 kb on - strand, within PP_0072 at 82.887 kb on - strand, within PP_0072 at 82.887 kb on - strand, within PP_0072 at 82.887 kb on - strand, within PP_0072 at 82.887 kb on - strand, within PP_0072 at 82.887 kb on - strand, within PP_0072 at 82.923 kb on - strand, within PP_0072 at 82.923 kb on - strand, within PP_0072 at 82.975 kb on - strand, within PP_0072 at 82.975 kb on - strand, within PP_0072 at 82.992 kb on + strand, within PP_0072 at 82.993 kb on - strand, within PP_0072 at 82.993 kb on - strand, within PP_0072 at 82.996 kb on + strand, within PP_0072 at 83.141 kb on + strand at 83.142 kb on - strand at 83.217 kb on + strand at 83.217 kb on + strand at 83.218 kb on - strand at 83.218 kb on - strand at 84.170 kb on + strand at 84.171 kb on - strand at 84.187 kb on + strand at 84.207 kb on + strand at 85.077 kb on + strand at 85.078 kb on - strand at 85.078 kb on - strand at 85.078 kb on - strand at 85.078 kb on - strand at 85.084 kb on + strand at 85.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. put PUT 10 MOI 0.1 remove 82,323 + PP_0072 0.18 -0.3 82,323 + PP_0072 0.18 -0.0 82,323 + PP_0072 0.18 -0.5 82,323 + PP_0072 0.18 +0.5 82,323 + PP_0072 0.18 +0.7 82,323 + PP_0072 0.18 -0.8 82,323 + PP_0072 0.18 -2.2 82,323 + PP_0072 0.18 -0.3 82,323 + PP_0072 0.18 -1.0 82,324 - PP_0072 0.18 +0.5 82,324 - PP_0072 0.18 -0.8 82,350 + PP_0072 0.20 +0.2 82,351 - PP_0072 0.20 -0.7 82,351 - PP_0072 0.20 +0.4 82,351 - PP_0072 0.20 +0.2 82,351 - PP_0072 0.20 -0.1 82,488 + PP_0072 0.34 +0.6 82,488 + PP_0072 0.34 +0.3 82,488 + PP_0072 0.34 +0.0 82,488 + PP_0072 0.34 -0.3 82,489 - PP_0072 0.35 -1.1 82,489 - PP_0072 0.35 -0.7 82,489 - PP_0072 0.35 +3.4 82,527 - PP_0072 0.38 +0.9 82,671 - PP_0072 0.53 -0.4 82,671 - PP_0072 0.53 -0.3 82,671 - PP_0072 0.53 +0.6 82,671 - PP_0072 0.53 -0.0 82,722 + PP_0072 0.58 +0.9 82,722 + PP_0072 0.58 +0.8 82,722 + PP_0072 0.58 -0.9 82,722 + PP_0072 0.58 -1.5 82,722 + PP_0072 0.58 +1.5 82,723 - PP_0072 0.58 +0.4 82,723 - PP_0072 0.58 -0.3 82,723 - PP_0072 0.58 +0.1 82,740 + PP_0072 0.60 +0.0 82,740 + PP_0072 0.60 +0.3 82,740 + PP_0072 0.60 -0.1 82,740 + PP_0072 0.60 -1.0 82,740 + PP_0072 0.60 +0.4 82,740 + PP_0072 0.60 +0.3 82,741 - PP_0072 0.60 -1.5 82,827 - PP_0072 0.69 -0.6 82,831 + PP_0072 0.70 +0.2 82,831 + PP_0072 0.70 +0.3 82,831 + PP_0072 0.70 +0.1 82,831 + PP_0072 0.70 -0.4 82,832 - PP_0072 0.70 +0.5 82,832 - PP_0072 0.70 +1.4 82,846 - PP_0072 0.71 -0.1 82,887 - PP_0072 0.75 +0.7 82,887 - PP_0072 0.75 -1.2 82,887 - PP_0072 0.75 -0.8 82,887 - PP_0072 0.75 +0.4 82,887 - PP_0072 0.75 -1.5 82,923 - PP_0072 0.79 -0.1 82,923 - PP_0072 0.79 -0.3 82,975 - PP_0072 0.84 -0.1 82,975 - PP_0072 0.84 -0.3 82,992 + PP_0072 0.86 -0.3 82,993 - PP_0072 0.86 +0.4 82,993 - PP_0072 0.86 -0.7 82,996 + PP_0072 0.86 -0.3 83,141 + -0.3 83,142 - -1.1 83,217 + -3.6 83,217 + -0.8 83,218 - -0.7 83,218 - +0.6 84,170 + -0.7 84,171 - -1.2 84,187 + -1.6 84,207 + +2.0 85,077 + -1.7 85,078 - +0.8 85,078 - -1.3 85,078 - +0.2 85,078 - +0.4 85,084 + +0.3 85,085 - -0.3
Or see this region's nucleotide sequence