Strain Fitness in Pseudomonas putida KT2440 around PP_t57

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,074,786	-				-0.4
5,074,786	-				+0.2
5,074,792	-				+0.5
5,074,840	+		PP_4468	0.19	-1.4
5,074,841	-		PP_4468	0.20	-0.5
5,074,841	-		PP_4468	0.20	-0.1
5,074,876	+		PP_4468	0.27	-0.6
5,074,876	+		PP_4468	0.27	+1.2
5,074,918	-		PP_4468	0.35	-0.7
5,074,983	+		PP_4468	0.48	-0.3
5,074,983	+		PP_4468	0.48	-0.8
5,075,037	+		PP_4468	0.59	-0.2
5,075,037	+		PP_4468	0.59	+1.2
5,075,038	-		PP_4468	0.60	-0.1
5,075,067	+		PP_4468	0.65	-1.0
5,075,067	+				-0.8
5,075,067	+		PP_4468	0.65	+0.0
5,075,067	+		PP_4468	0.65	-1.9
5,075,067	+		PP_4468	0.65	-1.0
5,075,068	-		PP_4468	0.66	-0.2
5,075,068	-		PP_4468	0.66	+0.2
5,075,099	-		PP_4468	0.72	+0.5
5,075,099	-		PP_4468	0.72	-0.1
5,075,099	-		PP_4468	0.72	+0.1
5,075,109	+		PP_4468	0.74	-0.2
5,075,109	+		PP_4468	0.74	-1.3
5,075,109	+		PP_4468	0.74	-0.6
5,075,109	+		PP_4468	0.74	+2.3
5,075,109	+		PP_4468	0.74	-0.3
5,075,109	+		PP_4468	0.74	+0.1
5,075,110	-		PP_4468	0.74	-0.6
5,075,110	-				-0.8
5,075,110	-		PP_4468	0.74	-0.1
5,075,110	-		PP_4468	0.74	+0.9
5,075,110	-		PP_4468	0.74	-0.3
5,075,140	+		PP_4468	0.80	+0.9
5,075,140	+		PP_4468	0.80	-0.9
5,075,176	-		PP_4468	0.88	-0.6
5,075,234	+				-0.2
5,075,234	+				-0.8
5,075,264	+				-0.7
5,075,264	+				-0.4
5,075,264	+				-0.3
5,075,265	-				-1.1
5,075,346	+				+0.3
5,075,347	-				-0.1
5,075,347	-				+0.8
5,075,347	-				+1.0
5,075,364	-				+0.4
5,075,395	+				+0.2
5,075,395	+				-0.4
5,075,395	+				-1.3
5,075,396	-				-0.5
5,075,396	-				-0.3
5,075,404	+				+0.0
5,075,404	+				+1.2
5,075,405	-				-2.5
5,075,405	-				-0.2
5,075,405	-				-0.7
5,075,434	+				-1.3
5,075,584	+		PP_t58	0.39	+0.5
5,075,585	-		PP_t58	0.40	-1.3
5,075,619	+		PP_t58	0.88	-0.5
5,075,619	+		PP_t58	0.88	+0.5
5,075,619	+		PP_t58	0.88	-0.5
5,075,662	+				+1.5
5,075,663	-				-0.5
5,075,663	-				-1.5
5,075,717	+				-0.8
5,075,717	+				-3.8
5,075,739	+				-1.7
5,075,739	+				-0.9
5,075,739	+				-2.5
5,075,739	+				-3.5
5,075,739	+				-3.8
5,075,739	+				-3.1
5,075,739	+				-1.8
5,075,740	-				-0.2
5,075,740	-				+0.1
5,075,740	-				+0.4
5,075,747	+				-0.1
5,075,747	+				-3.8
5,075,757	+				-3.2
5,075,758	-				+0.0
5,075,771	+		PP_t57	0.13	-3.0
5,075,771	+		PP_t57	0.13	-1.5
5,075,771	+		PP_t57	0.13	-2.2
5,075,772	-		PP_t57	0.14	-0.5
5,075,772	-		PP_t57	0.14	+0.1
5,075,772	-		PP_t57	0.14	-0.4
5,075,823	-		PP_t57	0.88	-0.9
5,075,834	-				-1.1
5,075,876	+				-1.5
5,075,877	-				-1.3
5,075,923	+				-1.5
5,075,924	-				+0.2
5,075,953	+				-1.3
5,075,954	-				-1.0
5,075,957	-				-0.2
5,075,957	-				+0.6
5,076,018	+		PP_4469	0.13	-1.8
5,076,200	+		PP_4469	0.43	-0.4
5,076,272	+		PP_4469	0.55	+0.2
5,076,272	+		PP_4469	0.55	+0.7
5,076,273	-		PP_4469	0.55	+1.1
5,076,273	-		PP_4469	0.55	-0.0
5,076,273	-		PP_4469	0.55	+0.6
5,076,273	-		PP_4469	0.55	-0.8
5,076,277	+		PP_4469	0.56	-0.8
5,076,277	+		PP_4469	0.56	-0.2
5,076,278	-		PP_4469	0.56	+0.7
5,076,278	-		PP_4469	0.56	+0.8
5,076,327	+		PP_4469	0.64	+0.1
5,076,488	-				-0.1
5,076,488	-				+0.1
5,076,534	+				-1.7
5,076,541	+				+0.1
5,076,541	+				-0.5
5,076,542	-				-0.1
5,076,542	-				+0.9
5,076,542	-				+0.4
5,076,548	+				+0.3
5,076,548	+				+0.3
5,076,548	+				-0.2
5,076,549	-				-1.8
5,076,549	-				+0.0
5,076,551	-				+0.9
5,076,636	+		PP_5693	0.36	-0.5
5,076,705	-		PP_5693	0.61	-0.1
5,076,716	+		PP_5693	0.65	-0.5
5,076,717	-		PP_5693	0.66	+0.2
5,076,727	+		PP_5693	0.69	-0.4
5,076,728	-		PP_5693	0.70	-0.7
5,076,728	-		PP_5693	0.70	-1.0
5,076,728	-		PP_5693	0.70	+0.3
5,076,728	-		PP_5693	0.70	+0.2
5,076,815	+				-2.9
5,076,816	-				-0.4