Strain Fitness in Pseudomonas putida KT2440 around PP_5409

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
6,169,483	-		PP_5408	0.31	+1.4
6,169,508	+		PP_5408	0.33	+0.0
6,169,611	-		PP_5408	0.42	+0.1
6,169,727	-		PP_5408	0.52	-0.9
6,169,786	-		PP_5408	0.57	-0.2
6,169,816	-		PP_5408	0.59	+0.9
6,169,816	-		PP_5408	0.59	-1.0
6,169,868	-		PP_5408	0.64	+0.5
6,169,905	+		PP_5408	0.67	-0.7
6,169,906	-		PP_5408	0.67	-1.0
6,169,906	-		PP_5408	0.67	-0.4
6,169,906	-		PP_5408	0.67	-0.9
6,169,906	-		PP_5408	0.67	-0.1
6,169,906	-		PP_5408	0.67	+0.1
6,169,953	-		PP_5408	0.71	+0.5
6,169,978	+		PP_5408	0.73	-0.3
6,170,064	-		PP_5408	0.80	-0.0
6,170,211	+				+0.0
6,170,212	-				-0.2
6,170,254	+				+0.8
6,170,254	+				+0.5
6,170,407	+				-2.0
6,170,407	+				+0.7
6,170,408	-				-0.0
6,170,408	-				-0.3
6,170,428	-				+0.4
6,170,461	-				-0.0
6,172,395	-		PP_5410	0.12	-0.2
6,172,395	-		PP_5410	0.12	+0.0
6,172,395	-		PP_5410	0.12	+0.5
6,172,395	-		PP_5410	0.12	+0.9
6,172,395	-		PP_5410	0.12	-0.1
6,172,398	-		PP_5410	0.12	+1.0
6,172,398	-		PP_5410	0.12	-0.9
6,172,398	-		PP_5410	0.12	-0.3
6,172,533	-		PP_5410	0.29	-0.7
6,172,533	-		PP_5410	0.29	-0.7
6,172,533	-		PP_5410	0.29	-0.0
6,172,533	-		PP_5410	0.29	+0.8
6,172,533	-		PP_5410	0.29	+2.2
6,172,533	-		PP_5410	0.29	-1.1
6,172,592	-		PP_5410	0.37	-0.8
6,172,797	-		PP_5410	0.63	+0.7
6,172,797	-		PP_5410	0.63	-1.9
6,172,797	-		PP_5410	0.63	+0.4
6,172,916	-		PP_5410	0.79	-0.5
6,173,014	-				+0.1
6,173,014	-				-0.5
6,173,014	-				-0.1
6,173,014	-				+0.2
6,173,046	-				+0.7
6,173,046	-				+0.4
6,173,046	-				-0.3
6,173,046	-				+0.5
6,173,046	-				+0.0
6,173,046	-				-0.8
6,173,046	-				-1.4
6,173,046	-				+0.1
6,173,194	+				+0.3
6,173,194	+				-0.3
6,173,194	+				-0.1
6,173,194	+				+0.4
6,173,195	-				-1.8
6,173,195	-				-0.1
6,173,195	-				-0.2
6,173,196	+				-0.2
6,173,196	+				+2.1
6,173,197	-				-0.3
6,173,228	+				-0.1
6,173,228	+				+0.8
6,173,228	+				+0.3
6,173,236	+				+1.0
6,173,237	-				-1.4
6,173,237	-				-0.9