Strain Fitness in Pseudomonas putida KT2440 around PP_5278

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
6,027,070	+		PP_5277	0.31	-0.8
6,027,071	-				+1.7
6,027,082	+		PP_5277	0.32	-3.3
6,027,082	+		PP_5277	0.32	-0.5
6,027,082	+		PP_5277	0.32	+0.2
6,027,082	+		PP_5277	0.32	-0.6
6,027,083	-		PP_5277	0.32	-0.7
6,027,083	-		PP_5277	0.32	-1.2
6,027,083	-		PP_5277	0.32	+0.1
6,027,083	-		PP_5277	0.32	+0.1
6,027,083	-		PP_5277	0.32	-0.3
6,027,083	-		PP_5277	0.32	-0.7
6,027,140	-		PP_5277	0.37	-0.9
6,027,189	+		PP_5277	0.41	-0.7
6,027,190	-		PP_5277	0.41	-0.3
6,027,448	-		PP_5277	0.64	+0.6
6,027,448	-		PP_5277	0.64	+1.0
6,027,459	+		PP_5277	0.65	-2.4
6,027,583	-		PP_5277	0.76	-2.0
6,027,586	+		PP_5277	0.76	-1.0
6,027,586	+		PP_5277	0.76	+0.1
6,027,586	+		PP_5277	0.76	-1.1
6,027,587	-		PP_5277	0.76	-1.3
6,027,587	-		PP_5277	0.76	+0.2
6,027,587	-		PP_5277	0.76	+1.5
6,027,653	+		PP_5277	0.82	-0.4
6,027,701	+		PP_5277	0.86	+0.8
6,027,702	-		PP_5277	0.86	-1.6
6,027,831	-				-1.2
6,027,840	+				-0.4
6,027,840	+				+2.7
6,027,841	-				+0.6
6,027,841	-				-0.5
6,027,841	-				-0.3
6,027,858	-				-0.2
6,027,968	+				+0.3
6,028,001	+				-0.0
6,028,001	+				+0.1
6,028,001	+				-0.5
6,028,089	-				-1.1
6,028,182	-		PP_5278	0.14	-0.5
6,028,284	+		PP_5278	0.21	-0.2
6,028,316	+		PP_5278	0.23	-0.6
6,028,317	-		PP_5278	0.23	+0.3
6,028,317	-		PP_5278	0.23	+0.9
6,028,317	-		PP_5278	0.23	-1.4
6,028,395	-		PP_5278	0.29	-0.4
6,028,493	-		PP_5278	0.35	-1.3
6,028,493	-		PP_5278	0.35	-1.5
6,028,794	-		PP_5278	0.55	-2.2
6,028,794	-		PP_5278	0.55	-1.7
6,028,906	-		PP_5278	0.63	-3.8
6,029,045	+		PP_5278	0.72	-0.7
6,029,045	+		PP_5278	0.72	+0.5
6,029,046	-		PP_5278	0.72	-1.4
6,029,046	-		PP_5278	0.72	-3.5
6,029,046	-		PP_5278	0.72	-4.2
6,029,046	-		PP_5278	0.72	-4.8
6,029,461	-				-3.7
6,029,482	-				-3.0
6,029,482	-				-3.8
6,029,564	-				-2.9
6,029,632	-				-3.6
6,029,662	+				-2.9
6,029,662	+				-2.5
6,029,662	+				-1.8
6,029,662	+				-1.9
6,029,662	+				-1.5
6,029,662	+				-3.2
6,029,662	+				-1.4
6,029,662	+				-2.7
6,029,662	+				-2.2
6,029,663	-				-2.7
6,029,663	-				-2.3
6,029,663	-				-4.1
6,029,663	-				-3.4
6,029,663	-				-1.6
6,029,663	-				-2.8
6,029,763	-		PP_5279	0.29	-2.7
6,029,763	-		PP_5279	0.29	-1.8
6,029,806	-		PP_5279	0.41	-0.6
6,029,841	-		PP_5279	0.51	-1.8
6,029,855	+		PP_5279	0.55	-3.9
6,029,856	-		PP_5279	0.55	-2.4
6,029,856	-		PP_5279	0.55	-2.8
6,029,937	+		PP_5279	0.78	-3.4
6,029,938	-		PP_5279	0.78	-1.7
6,029,938	-		PP_5279	0.78	-1.8
6,029,993	+				-5.1
6,029,993	+				-2.8
6,029,994	-				-2.1
6,029,994	-				-2.4
6,029,994	-				-2.3
6,029,994	-				-3.0
6,029,994	-				-2.6
6,030,015	-				-1.7
6,030,026	+				-2.8
6,030,026	+				-2.4
6,030,026	+				-2.2
6,030,026	+				-1.4
6,030,026	+				-2.2
6,030,026	+				-3.0
6,030,027	-				-1.8
6,030,027	-				-1.4
6,030,027	-				-1.6
6,030,027	-				-1.1
6,030,027	-				-1.6
6,030,030	+				-1.6
6,030,030	+				-1.7
6,030,030	+				-2.9
6,030,030	+				-0.5
6,030,030	+				-4.4
6,030,030	+				-1.4
6,030,030	+				-0.3
6,030,030	+				-4.8
6,030,030	+				-2.6
6,030,030	+				-2.8
6,030,030	+				-2.9
6,030,031	-				-1.4
6,030,031	-				-2.1
6,030,031	-				-1.7
6,030,031	-				-0.8
6,030,031	-				+0.7
6,030,031	-				-1.7
6,030,031	-				-0.6
6,030,034	+				-3.0
6,030,034	+				-0.9
6,030,034	+				-2.4
6,030,035	-				+0.2