Strain Fitness in Pseudomonas putida KT2440 around PP_5277

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
6,025,796	-		PP_5276	0.43	-0.5
6,025,928	-		PP_5276	0.51	+0.2
6,025,945	+		PP_5276	0.53	-0.3
6,026,010	-		PP_5276	0.57	-0.2
6,026,061	-		PP_5276	0.60	-0.0
6,026,061	-		PP_5276	0.60	-0.7
6,026,128	+		PP_5276	0.64	+0.3
6,026,128	+		PP_5276	0.64	+0.5
6,026,128	+		PP_5276	0.64	-0.4
6,026,129	-		PP_5276	0.64	-0.7
6,026,158	+		PP_5276	0.66	+0.4
6,026,158	+		PP_5276	0.66	+0.2
6,026,158	+		PP_5276	0.66	+0.9
6,026,248	+		PP_5276	0.72	-0.6
6,026,248	+		PP_5276	0.72	+0.2
6,026,258	-		PP_5276	0.73	-0.1
6,026,294	-		PP_5276	0.75	-0.6
6,026,491	+		PP_5276	0.88	-0.1
6,026,491	+		PP_5276	0.88	+0.1
6,026,491	+				-0.8
6,026,492	-		PP_5276	0.88	-0.7
6,026,492	-		PP_5276	0.88	-0.0
6,026,537	-				-1.2
6,026,552	+				-0.9
6,026,552	+				+0.0
6,026,553	-				-0.5
6,026,556	+				+0.1
6,026,556	+				-0.4
6,026,556	+				+0.3
6,026,557	-				-0.0
6,026,557	-				-0.2
6,026,557	-				-0.0
6,026,557	-				+0.2
6,026,557	-				-0.5
6,026,557	-				-1.2
6,026,557	-				+0.5
6,026,678	+				-1.6
6,026,678	+				-1.6
6,026,678	+				+0.0
6,026,678	+				+0.9
6,026,678	+				+0.2
6,026,678	+				-2.2
6,026,678	+				+0.6
6,026,679	-				+0.3
6,026,679	-				-0.6
6,026,679	-				-1.2
6,026,679	-				+0.2
6,026,680	+				+0.3
6,026,680	+				-0.0
6,026,680	+				-0.5
6,026,680	+				-0.5
6,026,681	-				+0.8
6,026,759	+				-0.5
6,026,759	+				+0.1
6,026,759	+				-0.8
6,026,760	-				+0.3
6,026,760	-				-0.5
6,026,760	-				-0.2
6,027,070	+		PP_5277	0.31	-0.8
6,027,071	-				+1.7
6,027,082	+		PP_5277	0.32	-3.3
6,027,082	+		PP_5277	0.32	-0.5
6,027,082	+		PP_5277	0.32	+0.2
6,027,082	+		PP_5277	0.32	-0.6
6,027,083	-		PP_5277	0.32	-0.7
6,027,083	-		PP_5277	0.32	-1.2
6,027,083	-		PP_5277	0.32	+0.1
6,027,083	-		PP_5277	0.32	+0.1
6,027,083	-		PP_5277	0.32	-0.3
6,027,083	-		PP_5277	0.32	-0.7
6,027,140	-		PP_5277	0.37	-0.9
6,027,189	+		PP_5277	0.41	-0.7
6,027,190	-		PP_5277	0.41	-0.3
6,027,448	-		PP_5277	0.64	+0.6
6,027,448	-		PP_5277	0.64	+1.0
6,027,459	+		PP_5277	0.65	-2.4
6,027,583	-		PP_5277	0.76	-2.0
6,027,586	+		PP_5277	0.76	-1.0
6,027,586	+		PP_5277	0.76	+0.1
6,027,586	+		PP_5277	0.76	-1.1
6,027,587	-		PP_5277	0.76	-1.3
6,027,587	-		PP_5277	0.76	+0.2
6,027,587	-		PP_5277	0.76	+1.5
6,027,653	+		PP_5277	0.82	-0.4
6,027,701	+		PP_5277	0.86	+0.8
6,027,702	-		PP_5277	0.86	-1.6
6,027,831	-				-1.2
6,027,840	+				-0.4
6,027,840	+				+2.7
6,027,841	-				+0.6
6,027,841	-				-0.5
6,027,841	-				-0.3
6,027,858	-				-0.2
6,027,968	+				+0.3
6,028,001	+				-0.0
6,028,001	+				+0.1
6,028,001	+				-0.5
6,028,089	-				-1.1
6,028,182	-		PP_5278	0.14	-0.5
6,028,284	+		PP_5278	0.21	-0.2
6,028,316	+		PP_5278	0.23	-0.6
6,028,317	-		PP_5278	0.23	+0.3
6,028,317	-		PP_5278	0.23	+0.9
6,028,317	-		PP_5278	0.23	-1.4
6,028,395	-		PP_5278	0.29	-0.4
6,028,493	-		PP_5278	0.35	-1.3
6,028,493	-		PP_5278	0.35	-1.5
6,028,794	-		PP_5278	0.55	-2.2
6,028,794	-		PP_5278	0.55	-1.7