Strain Fitness in Pseudomonas putida KT2440 around PP_5101

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,822,130	-		PP_5099	0.20	-0.2
5,822,152	+		PP_5099	0.26	+0.8
5,822,356	+		PP_5099	0.72	+0.1
5,822,359	+		PP_5099	0.73	+0.4
5,822,359	+		PP_5099	0.73	+0.7
5,822,359	+		PP_5099	0.73	-0.2
5,822,360	-		PP_5099	0.73	-0.6
5,822,360	-		PP_5099	0.73	-1.1
5,822,360	-		PP_5099	0.73	-1.5
5,822,360	-		PP_5099	0.73	-0.7
5,822,360	-		PP_5099	0.73	-1.1
5,822,360	-		PP_5099	0.73	-1.7
5,822,494	+				+0.4
5,822,728	-		PP_5100	0.43	-1.2
5,822,728	-		PP_5100	0.43	-1.4
5,822,740	-		PP_5100	0.45	-4.0
5,822,989	+		PP_5100	0.87	-0.0
5,822,990	-		PP_5100	0.87	-1.8
5,823,128	+				-0.6
5,823,129	-				-1.9
5,823,129	-				-1.1
5,823,151	-				-2.7
5,823,215	+		PP_5101	0.13	-0.5
5,823,261	+		PP_5101	0.17	-1.2
5,823,261	+		PP_5101	0.17	-0.7
5,823,340	-		PP_5101	0.23	-1.1
5,823,351	+		PP_5101	0.24	-1.5
5,823,351	+		PP_5101	0.24	-1.5
5,823,351	+		PP_5101	0.24	-0.3
5,823,351	+		PP_5101	0.24	-2.2
5,823,352	-		PP_5101	0.24	-2.7
5,823,352	-		PP_5101	0.24	-1.1
5,823,361	+		PP_5101	0.25	-1.6
5,823,361	+		PP_5101	0.25	-1.0
5,823,362	-		PP_5101	0.25	-0.5
5,823,362	-		PP_5101	0.25	-1.5
5,823,680	+		PP_5101	0.52	-0.5
5,823,681	-		PP_5101	0.52	-0.9
5,823,813	+		PP_5101	0.64	-1.5
5,823,860	+		PP_5101	0.68	+0.2
5,823,860	+		PP_5101	0.68	-3.0
5,823,860	+		PP_5101	0.68	-1.7
5,823,968	+		PP_5101	0.77	-2.3
5,823,969	-		PP_5101	0.77	-2.1
5,824,119	+		PP_5101	0.90	-3.8
5,824,120	-		PP_5101	0.90	-1.8
5,824,158	+				-1.8
5,824,158	+				+0.2
5,824,226	+				-0.4
5,824,260	+				+0.5
5,824,329	+		PP_5102	0.24	+1.2
5,824,330	-		PP_5102	0.24	-0.6
5,824,463	+		PP_5102	0.65	+0.3
5,824,463	+		PP_5102	0.65	-1.4
5,824,463	+		PP_5102	0.65	+1.0
5,824,464	-		PP_5102	0.65	-0.1
5,824,464	-		PP_5102	0.65	-0.0
5,824,464	-		PP_5102	0.65	+0.5
5,824,508	+		PP_5102	0.79	-0.5
5,824,508	+		PP_5102	0.79	+0.8
5,824,508	+		PP_5102	0.79	+0.7
5,824,508	+		PP_5102	0.79	+0.7
5,824,509	-		PP_5102	0.79	+0.6
5,824,527	+		PP_5102	0.85	-0.4
5,824,527	+		PP_5102	0.85	-0.1
5,824,543	-		PP_5102	0.90	-0.1
5,824,592	+				+0.2
5,824,592	+				-0.4
5,824,592	+				-1.8
5,824,593	-				-1.2
5,824,670	+				+0.5
5,824,671	-				-0.2
5,824,693	-				+0.5
5,824,741	-				-0.8
5,824,850	+		PP_5103	0.14	-0.6
5,824,850	+		PP_5103	0.14	+0.0
5,824,850	+		PP_5103	0.14	+0.2
5,824,850	+		PP_5103	0.14	+0.8
5,824,850	+		PP_5103	0.14	+0.1
5,824,850	+		PP_5103	0.14	-1.5
5,824,850	+		PP_5103	0.14	+1.1
5,824,850	+		PP_5103	0.14	+1.1
5,824,850	+		PP_5103	0.14	+0.9
5,824,850	+		PP_5103	0.14	+1.5
5,824,851	-		PP_5103	0.14	-0.3
5,824,851	-		PP_5103	0.14	-0.4
5,824,851	-		PP_5103	0.14	+0.7
5,824,911	-		PP_5103	0.22	+1.0
5,824,911	-		PP_5103	0.22	+0.8
5,824,920	-		PP_5103	0.24	+0.4
5,825,074	-		PP_5103	0.45	+0.5
5,825,117	+		PP_5103	0.51	-0.7
5,825,118	-		PP_5103	0.51	-0.2
5,825,118	-		PP_5103	0.51	+1.1