Strain Fitness in Pseudomonas putida KT2440 around PP_5078

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,799,297	+		PP_5077	0.64	-0.5
5,799,297	+		PP_5077	0.64	+0.3
5,799,297	+		PP_5077	0.64	+1.9
5,799,298	-		PP_5077	0.64	-0.1
5,799,480	+		PP_5077	0.76	-0.4
5,799,480	+		PP_5077	0.76	-0.5
5,799,481	-		PP_5077	0.76	+0.1
5,799,481	-		PP_5077	0.76	+0.5
5,799,481	-		PP_5077	0.76	+0.1
5,799,580	+		PP_5077	0.82	+0.4
5,799,580	+		PP_5077	0.82	-0.4
5,799,581	-		PP_5077	0.82	-0.3
5,799,718	+				-0.8
5,799,718	+				-0.9
5,799,720	+				-0.6
5,799,721	-				+1.2
5,799,788	+				-0.6
5,799,822	+				+0.2
5,799,822	+				-1.5
5,799,823	-				+0.2
5,799,823	-				-0.0
5,800,965	-				-1.6
5,800,978	-				-2.4
5,801,062	+				-1.8
5,801,062	+				+0.7
5,801,674	-				-0.2
5,801,704	+				-0.5
5,801,704	+				-1.2
5,801,705	-				-0.7
5,801,705	-				-0.5
5,801,838	+		PP_5080	0.20	+0.2
5,801,839	-		PP_5080	0.20	+0.3
5,801,928	+		PP_5080	0.27	-0.1
5,801,929	-		PP_5080	0.27	+0.5