Strain Fitness in Pseudomonas putida KT2440 around PP_4985

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,679,045	+		PP_4984	0.48	-0.7
5,679,045	+		PP_4984	0.48	+0.0
5,679,046	-		PP_4984	0.48	+0.9
5,679,071	+		PP_4984	0.49	-1.1
5,679,071	+		PP_4984	0.49	-0.2
5,679,071	+		PP_4984	0.49	+0.2
5,679,071	+		PP_4984	0.49	+0.6
5,679,071	+		PP_4984	0.49	+0.4
5,679,083	+		PP_4984	0.50	+0.8
5,679,117	-		PP_4984	0.53	+0.5
5,679,131	-		PP_4984	0.54	+0.2
5,679,243	-		PP_4984	0.62	+0.7
5,679,282	-		PP_4984	0.64	-0.2
5,679,293	+		PP_4984	0.65	+1.0
5,679,293	+		PP_4984	0.65	-1.2
5,679,338	+		PP_4984	0.68	+0.1
5,679,338	+		PP_4984	0.68	-0.6
5,679,339	-		PP_4984	0.69	-0.2
5,679,339	-		PP_4984	0.69	+1.4
5,679,486	+		PP_4984	0.79	-1.0
5,679,548	+		PP_4984	0.83	-0.7
5,679,548	+		PP_4984	0.83	-0.3
5,679,635	+		PP_4984	0.90	+0.2
5,679,635	+		PP_4984	0.90	+0.2
5,679,636	-		PP_4984	0.90	+0.5
5,679,636	-		PP_4984	0.90	-0.5
5,679,651	-				+0.9
5,679,741	+				+0.8
5,679,927	+				-0.5
5,679,927	+				+0.0
5,679,927	+				-1.9
5,679,927	+				-0.2
5,679,927	+				+0.4
5,679,928	-				+0.7
5,679,932	-				-1.9
5,680,021	-		PP_4985	0.11	+0.0
5,680,021	-		PP_4985	0.11	+0.2
5,680,021	-		PP_4985	0.11	+1.1
5,680,090	-		PP_4985	0.20	+0.6
5,680,090	-		PP_4985	0.20	+0.3
5,680,090	-		PP_4985	0.20	+1.0
5,680,257	+		PP_4985	0.43	+2.3
5,680,377	-		PP_4985	0.60	+0.9
5,680,377	-		PP_4985	0.60	+0.9
5,680,532	+		PP_4985	0.82	+1.4
5,680,533	-		PP_4985	0.82	+0.5
5,680,666	+				+0.0
5,680,667	-				+1.1
5,680,675	+				-0.6
5,680,789	+		PP_4986	0.20	+0.5
5,680,790	-		PP_4986	0.20	-0.1
5,680,888	+		PP_4986	0.36	+1.0
5,680,888	+		PP_4986	0.36	-0.7
5,680,888	+		PP_4986	0.36	-0.5
5,680,889	-		PP_4986	0.36	+0.3
5,680,889	-		PP_4986	0.36	+0.4
5,681,026	+		PP_4986	0.58	-0.2
5,681,027	-		PP_4986	0.59	+0.1
5,681,027	-		PP_4986	0.59	-0.9
5,681,048	-		PP_4986	0.62	-0.4
5,681,048	-		PP_4986	0.62	-0.2
5,681,125	+		PP_4986	0.74	-0.0
5,681,125	+		PP_4986	0.74	+0.4
5,681,125	+		PP_4986	0.74	-0.4
5,681,125	+		PP_4986	0.74	+0.7
5,681,149	+		PP_4986	0.78	+0.4
5,681,223	-				+0.6
5,681,275	+				-2.1
5,681,276	-				-0.3
5,681,278	+				-0.8
5,681,278	+				+0.7
5,681,278	+				+1.1
5,681,278	+				+0.6
5,681,279	-				+0.2
5,681,279	-				-1.7
5,681,488	-				+1.1
5,681,617	-		PP_4987	0.28	+1.5