Strain Fitness in Pseudomonas putida KT2440 around PP_4971

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,663,128	+				+0.1
5,663,129	-				-0.2
5,663,129	-				-0.4
5,663,151	+				-0.3
5,663,151	+				+1.0
5,663,205	+				+1.0
5,663,205	+				-1.1
5,663,205	+				+1.4
5,663,362	+		PP_4971	0.11	+0.2
5,663,362	+		PP_4971	0.11	-1.6
5,663,362	+		PP_4971	0.11	-1.5
5,663,363	-		PP_4971	0.12	+0.3
5,663,363	-		PP_4971	0.12	-0.5
5,663,363	-		PP_4971	0.12	-2.5
5,663,363	-		PP_4971	0.12	-0.7
5,663,425	+		PP_4971	0.17	-1.1
5,663,426	-		PP_4971	0.17	-1.3
5,663,426	-		PP_4971	0.17	-1.3
5,663,426	-		PP_4971	0.17	-0.3
5,663,426	-		PP_4971	0.17	-1.4
5,663,426	-		PP_4971	0.17	-0.2
5,663,555	-		PP_4971	0.28	-1.8
5,663,555	-		PP_4971	0.28	-0.1
5,663,555	-		PP_4971	0.28	-1.2
5,663,555	-		PP_4971	0.28	-0.1
5,663,605	+		PP_4971	0.32	-0.4
5,663,605	+		PP_4971	0.32	-2.1
5,663,605	+		PP_4971	0.32	-0.2
5,663,606	-		PP_4971	0.32	+0.0
5,663,606	-		PP_4971	0.32	-0.9
5,663,606	-		PP_4971	0.32	-1.8
5,663,606	-		PP_4971	0.32	-0.1
5,663,606	-		PP_4971	0.32	-0.9
5,663,617	+		PP_4971	0.33	-2.3
5,663,707	+		PP_4971	0.41	-1.1
5,664,039	-		PP_4971	0.69	-1.5
5,664,067	+		PP_4971	0.71	-1.1
5,664,067	+		PP_4971	0.71	+0.2
5,664,067	+		PP_4971	0.71	-1.3
5,664,068	-		PP_4971	0.71	-0.9
5,664,068	-		PP_4971	0.71	-1.1
5,664,068	-		PP_4971	0.71	-0.7
5,664,068	-		PP_4971	0.71	-1.0
5,664,072	-		PP_4971	0.72	-2.1
5,664,125	+		PP_4971	0.76	-1.7
5,664,125	+		PP_4971	0.76	-1.6
5,664,126	-		PP_4971	0.76	-1.1
5,664,390	-				-0.3
5,664,399	-				-0.0
5,664,399	-				-0.5
5,664,399	-				-0.9
5,664,541	+		PP_4972	0.22	-0.2
5,664,541	+		PP_4972	0.22	-0.1
5,664,553	+		PP_4972	0.25	-0.0
5,664,553	+		PP_4972	0.25	+0.1
5,664,554	-		PP_4972	0.25	+0.3
5,664,554	-		PP_4972	0.25	+0.1
5,664,572	+		PP_4972	0.30	+0.6
5,664,573	-		PP_4972	0.30	+0.6
5,664,573	-		PP_4972	0.30	+0.7
5,664,574	+		PP_4972	0.30	+0.3
5,664,574	+		PP_4972	0.30	-3.6
5,664,574	+		PP_4972	0.30	-0.9
5,664,574	+		PP_4972	0.30	-0.4
5,664,574	+		PP_4972	0.30	-1.5
5,664,574	+		PP_4972	0.30	+0.2
5,664,574	+		PP_4972	0.30	-2.2
5,664,574	+		PP_4972	0.30	+0.7
5,664,574	+		PP_4972	0.30	-0.4
5,664,574	+		PP_4972	0.30	-0.7
5,664,574	+		PP_4972	0.30	+0.1
5,664,575	-		PP_4972	0.31	-0.6
5,664,575	-		PP_4972	0.31	-0.4
5,664,575	-		PP_4972	0.31	-0.4
5,664,575	-		PP_4972	0.31	-0.2
5,664,575	-		PP_4972	0.31	-0.0
5,664,575	-		PP_4972	0.31	+0.3
5,664,575	-		PP_4972	0.31	-0.0
5,664,575	-		PP_4972	0.31	-0.5
5,664,575	-		PP_4972	0.31	+0.3
5,664,575	-		PP_4972	0.31	-0.6
5,664,575	-		PP_4972	0.31	-0.3
5,664,668	-		PP_4972	0.55	+0.9
5,664,668	-		PP_4972	0.55	-0.1
5,664,717	-		PP_4972	0.67	+0.7
5,664,883	+				-0.9
5,664,884	-				-0.6
5,664,916	+				+0.9
5,664,916	+				+0.2
5,664,917	-				-1.3
5,665,049	+		PP_4973	0.21	-0.2
5,665,050	-		PP_4973	0.21	+0.1
5,665,111	+		PP_4973	0.29	+0.5
5,665,111	+		PP_4973	0.29	-0.7
5,665,111	+		PP_4973	0.29	+0.7
5,665,112	-		PP_4973	0.29	-0.4
5,665,133	-		PP_4973	0.31	-0.9
5,665,133	-		PP_4973	0.31	+0.0
5,665,187	+		PP_4973	0.38	+0.9
5,665,187	+		PP_4973	0.38	+0.4
5,665,238	+		PP_4973	0.44	+0.1
5,665,238	+		PP_4973	0.44	+0.6
5,665,239	-		PP_4973	0.44	-1.0