Strain Fitness in Pseudomonas putida KT2440 around PP_4875

Experiment: P. put PUT 10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. put PUT 10 MOI 1
5,542,803	+				-1.2
5,542,804	-				-3.5
5,542,804	-				-2.7
5,542,813	+				-2.7
5,542,815	-				-3.3
5,542,821	+				-3.5
5,542,837	-				-3.7
5,542,837	-				-1.2
5,542,872	+		PP_4874	0.13	-2.0
5,542,873	-		PP_4874	0.14	-3.2
5,542,879	+		PP_4874	0.15	-1.6
5,543,195	+		PP_4874	0.86	-3.8
5,543,409	+		PP_4875	0.15	-1.9
5,543,409	+		PP_4875	0.15	-3.5
5,543,409	+		PP_4875	0.15	-2.1
5,543,410	-		PP_4875	0.15	-4.0
5,543,410	-		PP_4875	0.15	+1.3
5,543,410	-		PP_4875	0.15	-3.0
5,543,410	-		PP_4875	0.15	-3.8
5,543,410	-		PP_4875	0.15	+0.8
5,543,410	-		PP_4875	0.15	-4.1
5,543,410	-		PP_4875	0.15	-1.5
5,543,410	-		PP_4875	0.15	+0.5
5,543,628	+		PP_4875	0.40	-2.9
5,543,647	-		PP_4875	0.43	+0.7
5,545,044	-				+0.3
5,545,047	+				+1.6
5,545,047	+				+0.6
5,545,047	+				+3.2
5,545,048	-				-0.8
5,545,048	-				+0.5
5,545,048	-				-0.9
5,545,048	-				-0.4